ID surl. DE SURL ( a=1828 t=1334 c=1084 g=992 n=5238) NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.278 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 96 101 1.27759 0 0: 0 0 TATAAA 2 4986 4991 1.27759 0 0: 0 0 TATAAA 3 5108 5113 1.27759 0 0: 0 0 TATAAA AI 00000 2 chain 2 sites find / exp.num. 1.278 interval 3 TD 1 240 235 1.27759 0 0: 0 0 TATAAA 2 4977 4972 1.27759 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 5.109 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 298 304 5.10938 0 0: 0 0 TTCATTT 2 332 338 5.10938 0 0: 0 0 TTCATTC 3 669 675 5.10938 0 0: 0 0 CTCAGTC 4 1015 1021 5.10938 0 0: 0 0 CTCAGTC 5 1399 1405 5.10938 0 0: 0 0 ATCATTT 6 1746 1752 5.10938 0 0: 0 0 GTCATTC 7 3328 3334 5.10938 0 0: 0 0 ATCAGTT 8 4322 4328 5.10938 0 0: 0 0 GTCAGTC 9 4750 4756 5.10938 0 0: 0 0 ATCAGTT AI 00000 2 chain 10 sites find / exp.num. 5.109 interval 9 TD 1 53 47 5.10938 0 0: 0 0 GTCAGTC 2 151 145 5.10938 0 0: 0 0 CTCAGTC 3 545 539 5.10938 0 0: 0 0 ATCATTC 4 1450 1444 5.10938 0 0: 0 0 TTCAGTT 5 1618 1612 5.10938 0 0: 0 0 TTCAGTT 6 2057 2051 5.10938 0 0: 0 0 ATCAGTT 7 2488 2482 5.10938 0 0: 0 0 TTCATTC 8 3859 3853 5.10938 0 0: 0 0 ATCAGTT 9 5065 5059 5.10938 0 0: 0 0 GTCAGTC 10 5163 5157 5.10938 0 0: 0 0 CTCAGTC NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 15 sites find / exp.num. 5.111 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 699 703 5.11133 0 0: 0 0 GGAAA 2 718 722 5.11133 0 0: 0 0 GGAAA 3 1332 1336 5.11133 0 0: 0 0 GGAAA 4 1519 1523 5.11133 0 0: 0 0 GGAAA 5 1755 1759 5.11133 0 0: 0 0 GGAAA 6 1909 1913 5.11133 0 0: 0 0 GGAAA 7 2015 2019 5.11133 0 0: 0 0 GGAAA 8 2609 2613 5.11133 0 0: 0 0 GGAAA 9 2626 2630 5.11133 0 0: 0 0 GGAAA 10 2668 2672 5.11133 0 0: 0 0 GGAAA 11 3038 3042 5.11133 0 0: 0 0 GGAAA 12 3159 3163 5.11133 0 0: 0 0 GGAAA 13 3650 3654 5.11133 0 0: 0 0 GGAAA 14 3689 3693 5.11133 0 0: 0 0 GGAAA 15 4077 4081 5.11133 0 0: 0 0 GGAAA AI 00000 2 chain 3 sites find / exp.num. 5.111 interval 9 TD 1 172 168 5.11133 0 0: 0 0 GGAAA 2 1978 1974 5.11133 0 0: 0 0 GGAAA 3 5184 5180 5.11133 0 0: 0 0 GGAAA NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.278 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 160 165 1.27759 0 0: 0 0 AATAAA 2 1311 1316 1.27759 0 0: 0 0 AATAAA 3 2823 2828 1.27759 0 0: 0 0 AATAAA 4 5172 5177 1.27759 0 0: 0 0 AATAAA AI 00000 2 chain 3 sites find / exp.num. 1.278 interval 3 TD 1 65 60 1.27759 0 0: 0 0 AATAAA 2 299 294 1.27759 0 0: 0 0 AATAAA 3 5077 5072 1.27759 0 0: 0 0 AATAAA NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 5.111 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 2272 2276 5.11133 0 0: 0 0 TATGT 2 3249 3253 5.11133 0 0: 0 0 TATGT 3 4980 4984 5.11133 0 0: 0 0 TATGT AI 00000 2 chain 11 sites find / exp.num. 5.111 interval 9 TD 1 520 516 5.11133 0 0: 0 0 TATGT 2 649 645 5.11133 0 0: 0 0 TATGT 3 945 941 5.11133 0 0: 0 0 TATGT 4 1344 1340 5.11133 0 0: 0 0 TATGT 5 2989 2985 5.11133 0 0: 0 0 TATGT 6 3017 3013 5.11133 0 0: 0 0 TATGT 7 3419 3415 5.11133 0 0: 0 0 TATGT 8 3593 3589 5.11133 0 0: 0 0 TATGT 9 4696 4692 5.11133 0 0: 0 0 TATGT 10 4793 4789 5.11133 0 0: 0 0 TATGT 11 4866 4862 5.11133 0 0: 0 0 TATGT NM **** 12.(15) HSV ORI SQ atatatatat CC max mismatch : 1 AI 00000 1 chain 5 sites find / exp.num. .155 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3011 3020 .15459 0 1: 1 0 ATACATATAT 2 4973 4982 .15459 0 1: 1 0 TTATATATAT 3 4975 4984 .15459 0 1: 1 0 ATATATATGT 4 4977 4986 .15459 0 1: 1 0 ATATATGTAT 5 4979 4988 .15459 0 1: 1 0 ATATGTATAT AI 00000 2 chain 5 sites find / exp.num. .155 interval 1 TD 1 3020 3011 .15459 0 1: 1 0 ATATATGTAT 2 4982 4973 .15459 0 1: 1 0 ATATATATAA 3 4984 4975 .15459 0 1: 1 0 ACATATATAT 4 4986 4977 .15459 0 1: 1 0 ATACATATAT 5 4988 4979 .15459 0 1: 1 0 ATATACATAT NM **** 13.(19) ARS Y XE DM SQ xtttatrtttx CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .279 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4971 4981 .27921 0 1: 1 0 TTTTATATATA AI 00000 2 chain 1 sites find / exp.num. .279 interval 1 TD 1 652 642 .27921 0 1: 1 0 CTTTATGTTTA NM **** 14.(24) ARS yeast, xenopus SQ xttttatrtttx AI 00000 2 chain 1 sites find / exp.num. .077 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 653 642 .07727 0 1: 1 0 TCTTTATGTTTA NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .289 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 650 659 .28923 0 1: 1 0 AAGAAACAAA 2 2823 2832 .28923 0 1: 1 0 AATAAACCAA AI 00000 2 chain 1 sites find / exp.num. .289 interval 1 TD 1 303 294 .28923 0 1: 1 0 AATGAATAAA NM **** 17(30). initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .638 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 500 508 .63843 0 0: 0 0 CAAATATGG 2 1512 1520 .63843 0 0: 0 0 GAAGAATGG 3 2398 2406 .63843 0 0: 0 0 CAATGATGG AI 00000 2 chain 2 sites find / exp.num. .638 interval 2 TD 1 3831 3823 .63843 0 0: 0 0 CAAATATGG 2 4137 4129 .63843 0 0: 0 0 CAAGCATGG NM **** 18(32).optimal sequence for initiation of translation by eukaryotik SQ accatgg AI 00000 2 chain 1 sites find / exp.num. .319 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 258 252 .31934 0 0: 0 0 ACCATGG NM **** 55(3). ANIMAL POLIMERASE II SQ ggycaatct-tataxax AI 00000 2 chain 5 sites find / exp.num. .194 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 54 16 .19428 23 2: 1 1 GGTCAGTCTacctagtctgtgtttgcagactaTATAAGT 2 54 18 .01079 21 1: 1 0 GGTCAGTCTacctagtctgtgtttgcagacTATATAA 3 5066 4996 .19428 55 2: 1 1 GGTCAGTCTacctagtctgtgtttgcagactatataagtatagctatcactacacctccctttcTTTAAAA 4 5066 5028 .19428 23 2: 1 1 GGTCAGTCTacctagtctgtgtttgcagactaTATAAGT 5 5066 5030 .01079 21 1: 1 0 GGTCAGTCTacctagtctgtgtttgcagacTATATAA NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 1 sites find / exp.num. 1.277 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3001 2992 1.27661 0 0: 0 0 CTTTCACAGG NM **** 63(16). MT ORI SQ tatgtcytr AI 00000 2 chain 1 sites find / exp.num. .080 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4793 4785 .07980 0 0: 0 0 TATGTCTTG NM **** 64(17). ORI MT !!! SQ trtgytytr AI 00000 2 chain 1 sites find / exp.num. .319 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1850 1842 .31921 0 0: 0 0 TGTGTTTTG NM **** 66(25).ARS-fragment of chlamydomonada SQ attaacaat AI 00000 2 chain 1 sites find / exp.num. .020 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 601 593 .01995 0 0: 0 0 ATTAACAAT NM **** 68(27).ARS of chloroplasts SQ anrtnaccaagt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .289 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4343 4354 .28912 0 1: 1 0 ATCTTACCAAGT NM **** 69(28).ARS of human SQ tattyytaaatttagtxt AI 00000 2 chain 1 sites find / exp.num. .101 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 655 638 .10131 0 4: 4 0 TTTCTTTATGTTTAGTTT NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 5.111 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 756 760 5.11133 0 0: 0 0 GCCTC 2 1209 1213 5.11133 0 0: 0 0 GCCTC 3 3964 3968 5.11133 0 0: 0 0 GCCTC AI 00000 2 chain 2 sites find / exp.num. 5.111 interval 9 TD 1 1104 1100 5.11133 0 0: 0 0 GCCTC 2 1113 1109 5.11133 0 0: 0 0 GCCTC NM **** 72(33).consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .279 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 642 652 .27921 0 1: 1 0 TAAACATAAAG AI 00000 2 chain 1 sites find / exp.num. .279 interval 1 TD 1 4981 4971 .27921 0 1: 1 0 TATATATAAAA NM **** 74(2a).Promotor of RNA polymerase 1 (mouse, rat) SQ atcttt-tattg AI 00000 2 chain 2 sites find / exp.num. .094 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1564 1538 .09441 16 1: 1 0 ATCTTGaactcaactggctcacTATTG 2 4639 4612 .09441 17 1: 1 0 GTCTTTtgctttttgtctttctcTATTG NM **** 75(3a).Promotor of RNA polymerase 1 (human) SQ atcttt-ttttgg AI 00000 2 chain 1 sites find / exp.num. .029 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 948 915 .02948 22 1: 1 0 ATCTATgtctctcgtacgttagattacgTTTTGG NM **** 76(4a).sequence common for transcription initiation sites of rRNA gen SQ trctgacacgctgtcctyt CC max mismatch : 5 AI 00000 1 chain 1 sites find / exp.num. .164 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3176 3194 .16412 0 5: 5 0 TGCTGATACACTGTCCAGA NM **** 80(11a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.278 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 438 443 1.27759 0 0: 0 0 GGGTTG AI 00000 2 chain 2 sites find / exp.num. 1.278 interval 3 TD 1 274 269 1.27759 0 0: 0 0 GGGTTG 2 289 284 1.27759 0 0: 0 0 GGGTTG NM **** 85(16a).one of two suggested consensus sequences for RNA-polymerase I SQ ggttgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.278 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 439 444 1.27759 0 0: 0 0 GGTTGG 2 3363 3368 1.27759 0 0: 0 0 GGTTGG AI 00000 2 chain 1 sites find / exp.num. 1.278 interval 3 TD 1 2834 2829 1.27759 0 0: 0 0 GGTTGG NM **** 101(33a)."Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.277 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 4974 4980 1.27734 0 0: 0 0 TATATAT 2 4976 4982 1.27734 0 0: 0 0 TATATAT 3 4984 4990 1.27734 0 0: 0 0 TATATAA 4 4986 4992 1.27734 0 0: 0 0 TATAAAT AI 00000 2 chain 6 sites find / exp.num. 1.277 interval 3 TD 1 24 18 1.27734 0 0: 0 0 TATATAA 2 240 234 1.27734 0 0: 0 0 TATAAAT 3 4977 4971 1.27734 0 0: 0 0 TATAAAA 4 4979 4973 1.27734 0 0: 0 0 TATATAA 5 4981 4975 1.27734 0 0: 0 0 TATATAT 6 5036 5030 1.27734 0 0: 0 0 TATATAA NM **** 103(36a).consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.278 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2268 2273 1.27759 0 0: 0 0 AAGTTA NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca AI 00000 2 chain 5 sites find / exp.num. 5.111 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1007 1003 5.11133 0 0: 0 0 CCGCA 2 1158 1154 5.11133 0 0: 0 0 CCGCA 3 1333 1329 5.11133 0 0: 0 0 CCGCA 4 1390 1386 5.11133 0 0: 0 0 CCGCA 5 4078 4074 5.11133 0 0: 0 0 CCGCA NM **** 110(3b).2nd binding-region of big T-antigene in begining of SQ tggagaaaaagaagagaggcttccacaggcaa CC max mismatch : 12 AI 00000 1 chain 1 sites find / exp.num. .042 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 3411 3442 .04158 0 12:12 0 TGGAACATAAGAAGTGAGCTTTCTGAAGCAGA NM **** 122(17b).‘onsensus sequence of a putative second polyadenylation sign SQ ttttcactgc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .155 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1974 1983 .15459 0 1: 1 0 TTTCCACTGC NM **** 125(23b).Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 2.555 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 1067 1073 2.55469 0 0: 0 0 TATCTGT 2 1800 1806 2.55469 0 0: 0 0 TATCTGG 3 2327 2333 2.55469 0 0: 0 0 TATCTGT 4 4749 4755 2.55469 0 0: 0 0 TATCAGT AI 00000 2 chain 5 sites find / exp.num. 2.555 interval 5 TD 1 1838 1832 2.55469 0 0: 0 0 TATCTGT 2 2940 2934 2.55469 0 0: 0 0 CATCTGT 3 3629 3623 2.55469 0 0: 0 0 CATCAGG 4 3860 3854 2.55469 0 0: 0 0 CATCAGT 5 4800 4794 2.55469 0 0: 0 0 TATCTGT NM **** 126(24b)."Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr AI 00000 2 chain 1 sites find / exp.num. 1.277 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 544 538 1.27734 0 0: 0 0 TCATTCA NM **** 127(25b).RNA processing in mitochondria NAR 13,31(Gnomic) SQ attcatac AI 00000 2 chain 1 sites find / exp.num. .080 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 542 535 .07982 0 0: 0 0 ATTCATAC NM **** 128(26b).Sequence present near the 3'-ends of yeast mitochondrial gen SQ aagaatat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .080 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2727 2734 .07982 0 0: 0 0 AAGAATAT NM **** 131(29b).Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg AI 00000 2 chain 1 sites find / exp.num. .638 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3001 2992 .63831 0 0: 0 0 CTTTCACAGG NM **** 136(38b).Conservative blocks in selfsplising introns 1 group B SQ aatcagcagg CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .155 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3639 3648 .15459 0 1: 1 0 AAGCAGCAGG NM **** 139(41b).Consensus sequence found in the same location in intervening SQ aaaatctt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .080 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3994 4001 .07982 0 0: 0 0 AAAATCTT NM **** 21(12). Mol.Cel.Biol. v62 n8 p1925 E2-PROTEINE OF PAPILLOMPAVIRUS SQ acc-ggt CC distance between two blocks of site: min = 6 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 1.276 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1736 1747 1.27612 6 0: 0 0 ACCatttctGGT AI 00000 2 chain 1 sites find / exp.num. 1.276 interval 3 TD 1 1747 1736 1.27612 6 0: 0 0 ACCagaaatGGT NM **** 24(23). E MOTIF Ig ENHANCER SQ cAgnTGGc AI 00000 2 chain 1 sites find / exp.num. .319 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2055 2048 .31927 0 0: 0 0 CAGTTGGC NM **** 25(25). LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.278 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1721 1726 1.27759 0 0: 0 0 GAACAG AI 00000 2 chain 1 sites find / exp.num. 1.278 interval 3 TD 1 608 603 1.27759 0 0: 0 0 GAACAG NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc AI 00000 2 chain 4 sites find / exp.num. 5.111 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1179 1175 5.11133 0 0: 0 0 CCTGC 2 2197 2193 5.11133 0 0: 0 0 CCTGC 3 3648 3644 5.11133 0 0: 0 0 CCTGC 4 4446 4442 5.11133 0 0: 0 0 CCTGC NM **** 27(33). LYSOZYME SILENCER 4 (EMBO j v6 n8 p2298) SQ atnnAgtaaaa CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .499 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 473 483 .49858 0 1: 1 0 ATCCAGTATAA AI 00000 2 chain 1 sites find / exp.num. .499 interval 2 TD 1 3621 3611 .49858 0 1: 1 0 ATGAAGTACAA NM **** 29(42).Enchanser region of virus PV SQ gctgtgqttttgca CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .358 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2871 2884 .35838 0 3: 3 0 GCAGTGCTATTGCA AI 00000 2 chain 1 sites find / exp.num. .358 interval 2 TD 1 2701 2688 .35838 0 3: 3 0 GCTGTTTTGTTGGA NM **** 32(52).Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ agcagctggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .155 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3640 3649 .15459 0 1: 1 0 AGCAGCAGGC NM **** 34(60).potential core sequence of enhancers of various human viruses SQ cxxxccac CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .639 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3050 3057 .63855 0 0: 0 0 CAAACCAC 2 3059 3066 .63855 0 0: 0 0 CATACCAC NM **** 35(63).enhancer core SV40 SQ tGTGgxxx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .639 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1071 1078 .63855 0 0: 0 0 TGTGGTAT AI 00000 2 chain 1 sites find / exp.num. .639 interval 2 TD 1 3955 3948 .63855 0 0: 0 0 TGTGGATA NM **** 156(22). Sph ELEMENT SV40 SQ raagyatgc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .080 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3268 3276 .07980 0 0: 0 0 AAAGCATGC 2 3768 3776 .07980 0 0: 0 0 GAAGTATGC NM **** 157(24). C MOTIF Ig ENHANCER SQ aAAACCACC CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .080 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4553 4561 .07980 0 1: 1 0 TAAACCACC NM **** 170(41).Block C of enchanser of virus SV40 SQ tgtggaaagtcccca CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .065 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4074 4088 .06459 0 3: 3 0 TGCGGAAAATCTCCA NM **** 177(51).Conservative elements of Ig enchanser(E1,E2,E3,E4,OCTA) SQ tcaagatggc CC 00000 2 chain 1 sites find / exp.num. .155 interval 1 AI num begin end exp.num. dist. mismatch site sequence TD 1 2604 2595 .15459 0 1: 1 0 TCAAGATAGC NM **** 39(26). NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 5.111 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 338 342 5.11133 0 0: 0 0 CCAAT 2 3958 3962 5.11133 0 0: 0 0 CCAAT 3 4743 4747 5.11133 0 0: 0 0 CCAAT AI 00000 2 chain 6 sites find / exp.num. 5.111 interval 9 TD 1 817 813 5.11133 0 0: 0 0 CCAAT 2 1131 1127 5.11133 0 0: 0 0 CCAAT 3 2060 2056 5.11133 0 0: 0 0 CCAAT 4 2545 2541 5.11133 0 0: 0 0 CCAAT 5 2903 2899 5.11133 0 0: 0 0 CCAAT 6 3572 3568 5.11133 0 0: 0 0 CCAAT NM **** 40(2). CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.276 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 674 684 1.27637 0 0: 0 0 TCAACCATCTC 2 1733 1743 1.27637 0 0: 0 0 TGTACCATTTC AI 00000 2 chain 2 sites find / exp.num. 1.276 interval 3 TD 1 3607 3597 1.27637 0 0: 0 0 TGGACCATTTC 2 3845 3835 1.27637 0 0: 0 0 TGTTCCATGAC NM **** 187(2.) CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.276 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 674 684 1.27637 0 0: 0 0 TCAACCATCTC 2 1733 1743 1.27637 0 0: 0 0 TGTACCATTTC AI 00000 2 chain 2 sites find / exp.num. 1.276 interval 3 TD 1 3607 3597 1.27637 0 0: 0 0 TGGACCATTTC 2 3845 3835 1.27637 0 0: 0 0 TGTTCCATGAC NM **** 191(6). E4F1 PROTEIN OF ADENOVIRUS SQ aCGTMAc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .639 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4391 4397 .63867 0 0: 0 0 ACGTCAC NM **** 192(7). LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 5.110 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1099 1104 5.11035 0 0: 0 0 AGAGGC 2 1108 1113 5.11035 0 0: 0 0 TGAGGC 3 4898 4903 5.11035 0 0: 0 0 AGGGGC AI 00000 2 chain 2 sites find / exp.num. 5.110 interval 9 TD 1 761 756 5.11035 0 0: 0 0 TGAGGC 2 1214 1209 5.11035 0 0: 0 0 TGAGGC NM **** 193(8). RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 1.276 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 242 254 1.27588 7 0: 0 0 TGGaaccaagCCA AI 00000 2 chain 1 sites find / exp.num. 1.276 interval 3 TD 1 254 242 1.27588 7 0: 0 0 TGGcttggttCCA NM **** 201(21). Binding site for the human transcription factor Sp1 SQ gggcgg AI 00000 2 chain 1 sites find / exp.num. 1.278 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3685 3680 1.27759 0 0: 0 0 GGGCGG NM **** 203(23).Consensus sequence for cAMP receptor protein (CRP or CAP) SQ aantgtganntnnnnca AI 00000 2 chain 1 sites find / exp.num. .154 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 967 951 .15438 0 1: 1 0 AACTGTGATCTCGTGAA NM **** 209(30).Site of initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .638 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 500 508 .63843 0 0: 0 0 CAAATATGG 2 1512 1520 .63843 0 0: 0 0 GAAGAATGG 3 2398 2406 .63843 0 0: 0 0 CAATGATGG AI 00000 2 chain 2 sites find / exp.num. .638 interval 2 TD 1 3831 3823 .63843 0 0: 0 0 CAAATATGG 2 4137 4129 .63843 0 0: 0 0 CAAGCATGG NM **** 210(32).Optimal sequence for initiation of translation by eukaryotik SQ accatgg AI 00000 2 chain 1 sites find / exp.num. .319 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 258 252 .31934 0 0: 0 0 ACCATGG NM **** 41(5). HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.277 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1591 1598 1.27710 0 0: 0 0 TTCCTGAA 2 3408 3415 1.27710 0 0: 0 0 TTCTGGAA 3 3511 3518 1.27710 0 0: 0 0 TTCATGAA AI 00000 2 chain 3 sites find / exp.num. 1.277 interval 3 TD 1 1598 1591 1.27710 0 0: 0 0 TTCAGGAA 2 3415 3408 1.27710 0 0: 0 0 TTCCAGAA 3 3518 3511 1.27710 0 0: 0 0 TTCATGAA NM **** 44(10). HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc AI 00000 2 chain 1 sites find / exp.num. 1.277 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 450 444 1.27734 0 0: 0 0 TGCACTC NM **** 46(12). SRE ELEMENT OF HSP70 pnas v84 n8 p2203 H21.30 SQ aagggaaaag CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .155 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1717 1726 .15459 0 1: 1 0 AAGGGAACAG NM **** 48(33).Consensus sequence of the recognition sites for the glucocorti SQ tgttct AI 00000 2 chain 2 sites find / exp.num. 1.278 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1843 1838 1.27759 0 0: 0 0 TGTTCT 2 2152 2147 1.27759 0 0: 0 0 TGTTCT NM **** 52(9). ACUTE REACTANT RESPONSIVE ELEMENT SQ xtZtgGgAx AI 00000 2 chain 1 sites find / exp.num. .160 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2684 2676 .15961 0 0: 0 0 ATCTGGGAT NM **** 234(3). LIVER-SPECIFIC FACtOR SQ TCntacTC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .319 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4270 4277 .31927 0 0: 0 0 TCATACTC NM **** 242(11). ANTITROMBIN-III ENHANCER SPECIFIC FACTOR SQ gtGGxxxg AI 00000 2 chain 2 sites find / exp.num. .639 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3057 3050 .63855 0 0: 0 0 GTGGTTTG 2 3066 3059 .63855 0 0: 0 0 GTGGTATG NM **** 252(21). RIBOSOMAL PROTEIN SPECIFIC MOTIF (JBC v263 n33 p17772) SQ cttccg AI 00000 2 chain 2 sites find / exp.num. 1.278 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2299 2294 1.27759 0 0: 0 0 CTTCCG 2 2346 2341 1.27759 0 0: 0 0 CTTCCG NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 2.555 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 166 171 2.55518 0 0: 0 0 GATTTC 2 3782 3787 2.55518 0 0: 0 0 GACTTC 3 5178 5183 2.55518 0 0: 0 0 GATTTC AI 00000 2 chain 7 sites find / exp.num. 2.555 interval 5 TD 1 230 225 2.55518 0 0: 0 0 GACTTC 2 1338 1333 2.55518 0 0: 0 0 GATTTC 3 1761 1756 2.55518 0 0: 0 0 GATTTC 4 2348 2343 2.55518 0 0: 0 0 GACTTC 5 2715 2710 2.55518 0 0: 0 0 GACTTC 6 3300 3295 2.55518 0 0: 0 0 GATTTC 7 4012 4007 2.55518 0 0: 0 0 GACTTC NM **** 257(26).Regulated element of gene LSP of D.melanogaster EMBO J (1985) V 4 N P 3789 H aaaytaaagctggt CC max mismatch : 3 AI 00000 1 chain 2 sites find / exp.num. .358 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 581 594 .35838 0 3: 3 0 AAATTTAAGCTAAT 2 4165 4178 .35838 0 3: 3 0 ATACTAAATCTGTT NM **** 258(27).Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .319 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1748 1754 .31934 0 0: 0 0 CATTCCT AI 00000 2 chain 1 sites find / exp.num. .319 interval 1 TD 1 767 761 .31934 0 0: 0 0 CATTCCT NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 13 sites find / exp.num. 5.111 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 353 357 5.11133 0 0: 0 0 GAAGA 2 1250 1254 5.11133 0 0: 0 0 GAAGA 3 1512 1516 5.11133 0 0: 0 0 GAAGA 4 1791 1795 5.11133 0 0: 0 0 GAAGA 5 1998 2002 5.11133 0 0: 0 0 GAAGA 6 2479 2483 5.11133 0 0: 0 0 GAAGA 7 2726 2730 5.11133 0 0: 0 0 GAAGA 8 2757 2761 5.11133 0 0: 0 0 GAAGA 9 3231 3235 5.11133 0 0: 0 0 GAAGA 10 3234 3238 5.11133 0 0: 0 0 GAAGA 11 3983 3987 5.11133 0 0: 0 0 GAAGA 12 4183 4187 5.11133 0 0: 0 0 GAAGA 13 4473 4477 5.11133 0 0: 0 0 GAAGA AI 00000 2 chain 6 sites find / exp.num. 5.111 interval 9 TD 1 1036 1032 5.11133 0 0: 0 0 GAAGA 2 1593 1589 5.11133 0 0: 0 0 GAAGA 3 2068 2064 5.11133 0 0: 0 0 GAAGA 4 3099 3095 5.11133 0 0: 0 0 GAAGA 5 3455 3451 5.11133 0 0: 0 0 GAAGA 6 4002 3998 5.11133 0 0: 0 0 GAAGA NM **** 264(33)."CCAAT box";one of a number of homology blocks at the 5'-ends SQ grccaatnr AI 00000 2 chain 1 sites find / exp.num. .319 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3574 3566 .31921 0 0: 0 0 GGCCAATAG NM **** 266(35).Consensus pd sequense essential for correct transcription of SQ tgcazctgtgnccag CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .358 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3379 3393 .35831 0 3: 3 0 AGCAGCAATGCCCAG NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 11 sites find / exp.num. 5.110 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 366 371 5.11035 0 0: 0 0 AAGTGA 2 385 390 5.11035 0 0: 0 0 AAGTGA 3 696 701 5.11035 0 0: 0 0 AAGGGA 4 1508 1513 5.11035 0 0: 0 0 AAAGGA 5 1645 1650 5.11035 0 0: 0 0 AAGTGA 6 1717 1722 5.11035 0 0: 0 0 AAGGGA 7 1787 1792 5.11035 0 0: 0 0 AAGTGA 8 2665 2670 5.11035 0 0: 0 0 AAGGGA 9 3422 3427 5.11035 0 0: 0 0 AAGTGA 10 4187 4192 5.11035 0 0: 0 0 AAAGGA 11 5005 5010 5.11035 0 0: 0 0 AAGGGA AI 00000 2 chain 2 sites find / exp.num. 5.110 interval 9 TD 1 304 299 5.11035 0 0: 0 0 AAATGA 2 1405 1400 5.11035 0 0: 0 0 AAATGA NM **** 269(38).Consensus of a sequence found downstream from the cap site of SQ gcttctgr AI 00000 2 chain 1 sites find / exp.num. .160 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4541 4534 .15964 0 0: 0 0 GCTTCTGG NM **** 271(41).Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 5.111 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 2185 2189 5.11133 0 0: 0 0 CGCAC AI 00000 2 chain 2 sites find / exp.num. 5.111 interval 9 TD 1 1157 1153 5.11133 0 0: 0 0 CGCAC 2 1389 1385 5.11133 0 0: 0 0 CGCAC