ID TNTED DE Autographa californica nuclear polyhedrosis virus (AcMNPV) mutant FP-D with incorporated lepidopteran retrotransposon TED and three open reading frames. NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 656 661 1.83228 0 0: 0 0 TATAAA 2 746 751 1.83228 0 0: 0 0 TATAAA AI 00000 2 chain 6 sites find / exp.num. 1.832 interval 4 TD 1 749 744 1.83228 0 0: 0 0 TATAAA 2 958 953 1.83228 0 0: 0 0 TATAAA 3 2149 2144 1.83228 0 0: 0 0 TATAAA 4 5639 5634 1.83228 0 0: 0 0 TATAAA 5 6194 6189 1.83228 0 0: 0 0 TATAAA 6 6273 6268 1.83228 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 7.328 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 227 233 7.32813 0 0: 0 0 ATCATTT 2 1700 1706 7.32813 0 0: 0 0 CTCAGTC 3 1984 1990 7.32813 0 0: 0 0 ATCATTT 4 3461 3467 7.32813 0 0: 0 0 TTCATTC 5 4671 4677 7.32813 0 0: 0 0 CTCAGTT 6 5626 5632 7.32813 0 0: 0 0 ATCATTC 7 6211 6217 7.32813 0 0: 0 0 ATCATTC 8 6709 6715 7.32813 0 0: 0 0 TTCAGTT 9 7464 7470 7.32813 0 0: 0 0 ATCATTT AI 00000 2 chain 8 sites find / exp.num. 7.328 interval 12 TD 1 85 79 7.32813 0 0: 0 0 GTCATTC 2 2086 2080 7.32813 0 0: 0 0 CTCATTT 3 3835 3829 7.32813 0 0: 0 0 GTCAGTC 4 3888 3882 7.32813 0 0: 0 0 GTCATTC 5 4552 4546 7.32813 0 0: 0 0 TTCATTT 6 4747 4741 7.32813 0 0: 0 0 CTCATTT 7 6877 6871 7.32813 0 0: 0 0 TTCATTT 8 7322 7316 7.32813 0 0: 0 0 GTCATTC NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 7.330 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 807 811 7.33008 0 0: 0 0 GGAAA 2 2599 2603 7.33008 0 0: 0 0 GGAAA 3 2871 2875 7.33008 0 0: 0 0 GGAAA 4 3418 3422 7.33008 0 0: 0 0 GGAAA 5 3941 3945 7.33008 0 0: 0 0 GGAAA 6 3994 3998 7.33008 0 0: 0 0 GGAAA 7 4523 4527 7.33008 0 0: 0 0 GGAAA 8 4982 4986 7.33008 0 0: 0 0 GGAAA 9 6960 6964 7.33008 0 0: 0 0 GGAAA AI 00000 2 chain 12 sites find / exp.num. 7.330 interval 12 TD 1 45 41 7.33008 0 0: 0 0 GGAAA 2 1506 1502 7.33008 0 0: 0 0 GGAAA 3 2023 2019 7.33008 0 0: 0 0 GGAAA 4 2111 2107 7.33008 0 0: 0 0 GGAAA 5 3257 3253 7.33008 0 0: 0 0 GGAAA 6 3382 3378 7.33008 0 0: 0 0 GGAAA 7 4903 4899 7.33008 0 0: 0 0 GGAAA 8 5000 4996 7.33008 0 0: 0 0 GGAAA 9 6376 6372 7.33008 0 0: 0 0 GGAAA 10 6386 6382 7.33008 0 0: 0 0 GGAAA 11 7183 7179 7.33008 0 0: 0 0 GGAAA 12 7282 7278 7.33008 0 0: 0 0 GGAAA NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 209 214 1.83228 0 0: 0 0 AATAAA 2 2678 2683 1.83228 0 0: 0 0 AATAAA 3 3421 3426 1.83228 0 0: 0 0 AATAAA 4 4543 4548 1.83228 0 0: 0 0 AATAAA 5 5667 5672 1.83228 0 0: 0 0 AATAAA 6 5997 6002 1.83228 0 0: 0 0 AATAAA 7 6809 6814 1.83228 0 0: 0 0 AATAAA 8 7446 7451 1.83228 0 0: 0 0 AATAAA AI 00000 2 chain 2 sites find / exp.num. 1.832 interval 4 TD 1 1993 1988 1.83228 0 0: 0 0 AATAAA 2 2196 2191 1.83228 0 0: 0 0 AATAAA NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 7.330 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 463 467 7.33008 0 0: 0 0 TATGT 2 754 758 7.33008 0 0: 0 0 TATGT 3 814 818 7.33008 0 0: 0 0 TATGT 4 1047 1051 7.33008 0 0: 0 0 TATGT 5 1203 1207 7.33008 0 0: 0 0 TATGT 6 2441 2445 7.33008 0 0: 0 0 TATGT 7 3542 3546 7.33008 0 0: 0 0 TATGT AI 00000 2 chain 11 sites find / exp.num. 7.330 interval 12 TD 1 2065 2061 7.33008 0 0: 0 0 TATGT 2 2953 2949 7.33008 0 0: 0 0 TATGT 3 4139 4135 7.33008 0 0: 0 0 TATGT 4 4234 4230 7.33008 0 0: 0 0 TATGT 5 5045 5041 7.33008 0 0: 0 0 TATGT 6 5108 5104 7.33008 0 0: 0 0 TATGT 7 5176 5172 7.33008 0 0: 0 0 TATGT 8 6397 6393 7.33008 0 0: 0 0 TATGT 9 6497 6493 7.33008 0 0: 0 0 TATGT 10 7137 7133 7.33008 0 0: 0 0 TATGT 11 7141 7137 7.33008 0 0: 0 0 TATGT NM **** 9.(9) PRIMER REVERSE TRANSCRIPTION SQ TGGngzntygncygggax AI 00000 2 chain 1 sites find / exp.num. .420 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 452 435 .41993 0 3: 3 0 TGGTTCTTTCTCTGCGAA NM **** 10.(18) ORI HUM SQ taaatttagt CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .222 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1403 1412 .22176 0 1: 1 0 TAAATTTAAT 2 6289 6298 .22176 0 1: 1 0 TAAATTTAGA AI 00000 2 chain 6 sites find / exp.num. .222 interval 1 TD 1 2194 2185 .22176 0 1: 1 0 TAAATCTAGT 2 2252 2243 .22176 0 1: 1 0 CAAATTTAGT 3 4616 4607 .00715 0 0: 0 0 TAAATTTAGT 4 6023 6014 .22176 0 1: 1 0 TAAAGTTAGT 5 6296 6287 .22176 0 1: 1 0 TAAATTTAGA 6 6954 6945 .22176 0 1: 1 0 TGAATTTAGT NM **** 12.(15) HSV ORI SQ atatatatat CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .222 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 747 756 .22176 0 1: 1 0 ATAAATATAT AI 00000 2 chain 1 sites find / exp.num. .222 interval 1 TD 1 756 747 .22176 0 1: 1 0 ATATATTTAT NM **** 13.(19) ARS Y XE DM CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .401 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 811 821 .40054 0 1: 1 0 ATTTATGTTTG AI 00000 2 chain 1 sites find / exp.num. .401 interval 2 TD 1 4033 4023 .40054 0 1: 1 0 TTTAATGTTTT NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .415 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2239 2248 .41490 0 1: 1 0 AATAACTAAA 2 4543 4552 .41490 0 1: 1 0 AATAAATGAA NM **** 17(30). initiation of translation in genes of animals SQ zaannatgg AI 00000 2 chain 2 sites find / exp.num. .916 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2110 2102 .91577 0 0: 0 0 GAAACATGG 2 6225 6217 .91577 0 0: 0 0 CAATCATGG NM **** 18(32).optimal sequence for initiation of translation by eukaryotik SQ accatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2417 2423 .45801 0 0: 0 0 ACCATGG AI 00000 2 chain 1 sites find / exp.num. .458 interval 2 TD 1 2424 2418 .45801 0 0: 0 0 ACCATGG NM **** 54(2). POLIMERASE II -80 SQ yrrrccjcaccctg CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .043 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 366 379 .04335 0 1: 1 0 CAAGCCACATCCTG 2 3358 3371 .04335 0 1: 1 0 CAAGCCTAACCCTG NM **** 59(10). EXON-INTRON JUNCTION SQ mAGGtragt AI 00000 2 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1800 1792 .11447 0 0: 0 0 AAGGTAAGT NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.831 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3218 3227 1.83130 0 0: 0 0 TCCCTACAGG AI 00000 2 chain 3 sites find / exp.num. 1.831 interval 4 TD 1 2321 2312 1.83130 0 0: 0 0 TTCTTGCAGG 2 3229 3220 1.83130 0 0: 0 0 TTCCTGTAGG 3 3422 3413 1.83130 0 0: 0 0 TTTCCTTAGG NM **** 61(12). lar+3' SQ YTaAT-yyyyaG CC distance between two blocks of site: min = 16 max = 36 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 3 sites find / exp.num. 1.197 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 4677 4709 1.19746 22 0: 0 0 TTAATattgtacccccagctacgaaacCTCTAG 2 5764 5805 1.19746 31 0: 0 0 CTAATaaggttggcaaattactacaccaaattaaatCTTTAG 3 6090 6123 1.19746 23 0: 0 0 TTAATtaaatttgcgaaattcgcacaaaTCTTAG AI 00000 2 chain 2 sites find / exp.num. 1.197 interval 3 TD 1 922 886 1.19746 26 0: 0 0 TTAATtaaagatgatctaatgcctacccaggTTTCAG 2 5352 5313 1.19746 29 0: 0 0 TTAATgaatacttgctgctgagggatgtattctaCTTCAG NM **** 67(26).ARS-fragment of chlamydomonada SQ raattttaaat CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6283 6293 .11444 0 1: 1 0 AAATTCTAAAT NM **** 68(27).ARS of chloroplasts SQ anrtnaccaagt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .415 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2096 2107 .41479 0 1: 1 0 ACATTACCATGT AI 00000 2 chain 1 sites find / exp.num. .415 interval 2 TD 1 3339 3328 .41479 0 1: 1 0 ATGTGACCAAGA NM **** 69(28).ARS of human SQ tattyytaaatttagtxt CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .145 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6283 6300 .14540 0 4: 4 0 AAATTCTAAATTTAGAAC AI 00000 2 chain 4 sites find / exp.num. .145 interval 1 TD 1 753 736 .14540 0 4: 4 0 TATTTATAAATCTCGTTA 2 2258 2241 .14540 0 4: 4 0 TAGTTGCAAATTTAGTTA 3 5712 5695 .14540 0 4: 4 0 TAGTCCTAAATGTATTAA 4 6302 6285 .01430 0 3: 3 0 AAGTTCTAAATTTAGAAT NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 7.330 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 858 862 7.33008 0 0: 0 0 GCCTC AI 00000 2 chain 4 sites find / exp.num. 7.330 interval 12 TD 1 2211 2207 7.33008 0 0: 0 0 GCCTC 2 5908 5904 7.33008 0 0: 0 0 GCCTC 3 6235 6231 7.33008 0 0: 0 0 GCCTC 4 6502 6498 7.33008 0 0: 0 0 GCCTC NM **** 72(33).consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .401 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4023 4033 .40054 0 1: 1 0 AAAACATTAAA AI 00000 2 chain 1 sites find / exp.num. .401 interval 2 TD 1 821 811 .40054 0 1: 1 0 CAAACATAAAT NM **** 74(2a).Promotor of RNA polymerase 1 (mouse, rat) SQ atcttt-tattg AI 00000 2 chain 3 sites find / exp.num. .136 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 754 728 .13558 16 1: 1 0 ATATTTataaatctcgttaaaaTATTG 2 5229 5201 .13558 18 1: 1 0 ATCTGTtgacgatgattctgagcaTATTG 3 5551 5524 .13558 17 1: 1 0 ATCTCTtgaggatgcgtcgcatgTATTG NM **** 76(4a).sequence common for transcription initiation sites of rRNA gen SQ trctgacacgctgtcctyt AI 00000 2 chain 1 sites find / exp.num. .236 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2078 2060 .23555 0 5: 5 0 TACTGACACCGTGTATGTT NM **** 80(11a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2841 2846 1.83228 0 0: 0 0 GGGTTG 2 6776 6781 1.83228 0 0: 0 0 GGGTTG AI 00000 2 chain 5 sites find / exp.num. 1.832 interval 4 TD 1 727 722 1.83228 0 0: 0 0 GGGTTG 2 1400 1395 1.83228 0 0: 0 0 GGGTTG 3 1759 1754 1.83228 0 0: 0 0 GGGTTG 4 2465 2460 1.83228 0 0: 0 0 GGGTTG 5 5645 5640 1.83228 0 0: 0 0 GGGTTG NM **** 81(12a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttttg AI 00000 2 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3493 3486 .11449 0 0: 0 0 GGGTTTTG NM **** 82(13a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg AI 00000 2 chain 2 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 730 725 1.83228 0 0: 0 0 TTGGGG 2 2002 1997 1.83228 0 0: 0 0 TTGGGG NM **** 85(16a).one of two suggested consensus sequences for RNA-polymerase I SQ ggttgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 5771 5776 1.83228 0 0: 0 0 GGTTGG AI 00000 2 chain 1 sites find / exp.num. 1.832 interval 4 TD 1 2464 2459 1.83228 0 0: 0 0 GGTTGG NM **** 99(31a).putative regulatory sequence(promoter element) present in SQ gggnggrr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 7229 7236 1.83179 0 0: 0 0 GGGTGGAG NM **** 100(32a).consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .229 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 656 663 .22897 0 0: 0 0 TATAAAAA 2 746 753 .22897 0 0: 0 0 TATAAATA AI 00000 2 chain 1 sites find / exp.num. .229 interval 1 TD 1 2149 2142 .22897 0 0: 0 0 TATAAATA NM **** 101(33a)."Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 656 662 1.83203 0 0: 0 0 TATAAAA 2 746 752 1.83203 0 0: 0 0 TATAAAT 3 955 961 1.83203 0 0: 0 0 TATATAA 4 2271 2277 1.83203 0 0: 0 0 TATATAA 5 4751 4757 1.83203 0 0: 0 0 TATATAA 6 6364 6370 1.83203 0 0: 0 0 TATATAA AI 00000 2 chain 8 sites find / exp.num. 1.832 interval 4 TD 1 749 743 1.83203 0 0: 0 0 TATAAAT 2 960 954 1.83203 0 0: 0 0 TATATAA 3 1933 1927 1.83203 0 0: 0 0 TATATAT 4 2149 2143 1.83203 0 0: 0 0 TATAAAT 5 2151 2145 1.83203 0 0: 0 0 TATATAA 6 4756 4750 1.83203 0 0: 0 0 TATATAT 7 6194 6188 1.83203 0 0: 0 0 TATAAAA 8 6467 6461 1.83203 0 0: 0 0 TATATAA NM **** 103(36a).consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2327 2332 1.83228 0 0: 0 0 AAGTTA 2 2731 2736 1.83228 0 0: 0 0 AAGTTA 3 2763 2768 1.83228 0 0: 0 0 AAGTTA 4 2969 2974 1.83228 0 0: 0 0 AAGTTA AI 00000 2 chain 4 sites find / exp.num. 1.832 interval 4 TD 1 3279 3274 1.83228 0 0: 0 0 AAGTTA 2 3648 3643 1.83228 0 0: 0 0 AAGTTA 3 4446 4441 1.83228 0 0: 0 0 AAGTTA 4 6021 6016 1.83228 0 0: 0 0 AAGTTA NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 7.330 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 1290 1294 7.33008 0 0: 0 0 CCGCA 2 2260 2264 7.33008 0 0: 0 0 CCGCA AI 00000 2 chain 2 sites find / exp.num. 7.330 interval 12 TD 1 408 404 7.33008 0 0: 0 0 CCGCA 2 1133 1129 7.33008 0 0: 0 0 CCGCA NM **** 110(3b).2nd binding-region of big T-antigene in begining of SQ tggagaaaaagaagagaggcttccacaggcaa CC max mismatch : 12 AI 00000 1 chain 1 sites find / exp.num. .060 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3234 3265 .05972 0 12:12 0 TGGAGAACCTGGAACGAGTTTTCCAAAGACTT NM **** 113(6b).Sequence located at the 3'-ends of yeast genes,presumably SQ tttttata AI 00000 2 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 663 656 .11449 0 0: 0 0 TTTTTATA NM **** 114(7b).Termination of transcription of RNA polymerase I of mouse SQ aggtcgaccagxxntccg CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .264 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1702 1719 .26410 0 4: 4 0 CAGTCGACTATTATTCCG NM **** 115(8b).Termination of transcription of RNA polymerase I of human SQ gggtcgaccr CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .415 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 6833 6842 .41490 0 1: 1 0 GGGTCAACCA NM **** 121(16b).Consensus of a presumed polyadenylation signal in Trypanosom SQ aaaattyt CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .229 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 528 535 .22897 0 0: 0 0 AAAATTTT 2 1954 1961 .22897 0 0: 0 0 AAAATTCT AI 00000 2 chain 2 sites find / exp.num. .229 interval 1 TD 1 535 528 .22897 0 0: 0 0 AAAATTTT 2 1940 1933 .22897 0 0: 0 0 AAAATTCT NM **** 124(22b).Signal of formiration 3'-end in mnRNA SQ gttyn-aaarryaga CC distance between two blocks of site: min = 0 max = 3 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .157 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5109 5125 .15726 3 1: 0 1 GTTTCaccAAATGCAGA NM **** 125(23b).Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 3.664 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 3020 3026 3.66406 0 0: 0 0 TATCAGG 2 3175 3181 3.66406 0 0: 0 0 CATCTGT 3 4630 4636 3.66406 0 0: 0 0 TATCTGT AI 00000 2 chain 5 sites find / exp.num. 3.664 interval 7 TD 1 1460 1454 3.66406 0 0: 0 0 CATCTGT 2 3374 3368 3.66406 0 0: 0 0 TATCAGG 3 4886 4880 3.66406 0 0: 0 0 TATCAGT 4 5230 5224 3.66406 0 0: 0 0 CATCTGT 5 6477 6471 3.66406 0 0: 0 0 CATCTGT NM **** 126(24b)."Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1311 1317 1.83203 0 0: 0 0 CCATTCA AI 00000 2 chain 3 sites find / exp.num. 1.832 interval 4 TD 1 84 78 1.83203 0 0: 0 0 TCATTCA 2 3887 3881 1.83203 0 0: 0 0 TCATTCG 3 7321 7315 1.83203 0 0: 0 0 TCATTCA NM **** 130(28b).Site of splising of vertebrates 5'-end: PNAS (1984) V 81 N 2 SQ agguaagu CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2974 2981 .11449 0 0: 0 0 AGGTAAGT AI 00000 2 chain 2 sites find / exp.num. .114 interval 1 TD 1 1799 1792 .11449 0 0: 0 0 AGGTAAGT 2 5734 5727 .11449 0 0: 0 0 AGGTAAGT NM **** 131(29b).Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .916 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3218 3227 .91565 0 0: 0 0 TCCCTACAGG AI 00000 2 chain 1 sites find / exp.num. .916 interval 3 TD 1 2321 2312 .91565 0 0: 0 0 TTCTTGCAGG NM **** 132(33b).Brunch : PNAS (1984) V 81 N 23 P 7417 H SQ uacuaac AI 00000 2 chain 1 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2335 2329 .45801 0 0: 0 0 TACTAAC NM **** 133(34b).Site of splising of plants 5'-end: NAR (1986) V 14 N 24 P 95 SQ maggtaagt AI 00000 2 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1800 1792 .05724 0 0: 0 0 AAGGTAAGT NM **** 135(37b).Conservative blocks in selfsplising introns 1 group A: SQ augcuggaaa AI 00000 2 chain 1 sites find / exp.num. .222 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 7188 7179 .22176 0 1: 1 0 TTGCTGGAAA NM **** 137(39b).Conservative blocks in selfsplising introns 1 group box 9L: SQ tcagagactaca CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .282 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5082 5093 .28204 0 2: 2 0 TCATAGGCTACA 2 6599 6610 .28204 0 2: 2 0 TCAGAGTCTAGA NM **** 138(40b).Conservative blocks in selfsplising introns 1 group box 2: SQ aagatatagtcc AI 00000 2 chain 1 sites find / exp.num. .282 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6091 6080 .01654 0 1: 1 0 AAGCTATAGTCC NM **** 19(5). SECOND MOTIF OF Ad5 E1a SQ zgcgxaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1609 1615 1.83203 0 0: 0 0 GGCGTAA NM **** 20(7). DECAMER FROM IMMUNOGLOBULIN GENES SQ AtGCAAAtna CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .286 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5933 5942 .28614 0 1: 1 0 AGGCAAATTA NM **** 21(12). Mol.Cel.Biol. v62 n8 p1925 E2-PROTEINE OF PAPILLOMPAVIRUS SQ acc-ggt CC distance between two blocks of site: min = 6 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 1.831 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2833 2844 1.83081 6 0: 0 0 ACCcatatgGGT AI 00000 2 chain 1 sites find / exp.num. 1.831 interval 4 TD 1 2844 2833 1.83081 6 0: 0 0 ACCcatatgGGT NM **** 22(18). PNAS v84 n5 p1272 H21.3.5 PROTEIN BINDING SITE IN c-FOS ENHAN SQ cccgtc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3695 3700 1.83228 0 0: 0 0 CCCGTC AI 00000 2 chain 2 sites find / exp.num. 1.832 interval 4 TD 1 1600 1595 1.83228 0 0: 0 0 CCCGTC 2 2659 2654 1.83228 0 0: 0 0 CCCGTC NM **** 24(23). E MOTIF Ig ENHANCER SQ cAgnTGGc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 6711 6718 .45795 0 0: 0 0 CAGTTGGC AI 00000 2 chain 3 sites find / exp.num. .458 interval 2 TD 1 64 57 .45795 0 0: 0 0 CAGCTGGC 2 5966 5959 .45795 0 0: 0 0 CAGATGGC 3 7301 7294 .45795 0 0: 0 0 CAGCTGGC NM **** 25(25). LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 850 855 1.83228 0 0: 0 0 GAACAG 2 2537 2542 1.83228 0 0: 0 0 GAACAG NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 7.330 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 564 568 7.33008 0 0: 0 0 CCTGC 2 2312 2316 7.33008 0 0: 0 0 CCTGC AI 00000 2 chain 3 sites find / exp.num. 7.330 interval 12 TD 1 1122 1118 7.33008 0 0: 0 0 CCTGC 2 1212 1208 7.33008 0 0: 0 0 CCTGC 3 3349 3345 7.33008 0 0: 0 0 CCTGC NM **** 28(34). INTERFERONE BETA ENHANCER (J.Mol Biol v204 n2 p221) SQ aaxanngaaaggr CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .215 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3748 3760 .21452 0 1: 1 0 AATAGAGAAAGAA NM **** 30(43).Enchanser region of virus MSV SQ tctgtggtaaag CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .282 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4632 4643 .01654 0 1: 1 0 TCTGTGGTCAAG AI 00000 2 chain 3 sites find / exp.num. .282 interval 1 TD 1 1077 1066 .28204 0 2: 2 0 TCGTTGGTAAAG 2 3618 3607 .01654 0 1: 1 0 TCTCTGGTAAAG 3 7010 6999 .28204 0 2: 2 0 TGTGTGGTACAG NM **** 32(52).Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ agcagctggc AI 00000 2 chain 3 sites find / exp.num. .222 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 66 57 .22176 0 1: 1 0 TGCAGCTGGC 2 2503 2494 .22176 0 1: 1 0 AGAAGCTGGC 3 7303 7294 .22176 0 1: 1 0 TGCAGCTGGC NM **** 34(60).potential core sequence of enhancers of various human viruses SQ cxxxccac CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. .916 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1508 1515 .91589 0 0: 0 0 CTTACCAC 2 3838 3845 .91589 0 0: 0 0 CAAACCAC 3 3986 3993 .91589 0 0: 0 0 CATACCAC 4 4530 4537 .91589 0 0: 0 0 CAAACCAC 5 4791 4798 .91589 0 0: 0 0 CATACCAC 6 5000 5007 .91589 0 0: 0 0 CATTCCAC NM **** 35(63).enhancer core SV40 SQ tGTGgxxx AI 00000 2 chain 1 sites find / exp.num. .916 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 5008 5001 .91589 0 0: 0 0 TGTGGAAT NM **** 145(8). SV40 ENHANCER CORE SQ tgtggxxxg AI 00000 2 chain 1 sites find / exp.num. .229 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5008 5000 .22894 0 0: 0 0 TGTGGAATG NM **** 148(11). PNAS v84 n11 p3658 H21.3.9 HCMV site3 enh5 SQ ttcccatagtaacgcc AI 00000 2 chain 1 sites find / exp.num. .028 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2426 2411 .02836 0 3: 3 0 TTACCATGGTAACGCA NM **** 154(20). Mol.Cel.Biol. v5 n4 p649 H21.3.3 SQ ccaccca AI 00000 2 chain 1 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 7234 7228 .45801 0 0: 0 0 CCACCCA NM **** 157(24). C MOTIF Ig ENHANCER SQ aAAACCACC CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4530 4538 .11447 0 1: 1 0 CAAACCACC NM **** 158(26). LVb MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ caggata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 5396 5402 .45801 0 0: 0 0 CAGGATA AI 00000 2 chain 1 sites find / exp.num. .458 interval 2 TD 1 388 382 .45801 0 0: 0 0 CAGGATA NM **** 177(51).Conservative elements of Ig enchanser(E1,E2,E3,E4,OCTA) SQ tcaagatggc AI 00000 2 chain 1 sites find / exp.num. .222 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 837 828 .22176 0 1: 1 0 TCAAGATGCC NM **** 179(54).Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ cccaggtggt AI 00000 2 chain 1 sites find / exp.num. .222 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4542 4533 .22176 0 1: 1 0 CCCCGGTGGT NM **** 37(15). SP1 SQ gggcggr AI 00000 2 chain 1 sites find / exp.num. .916 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 4384 4378 .91602 0 0: 0 0 GGGCGGA NM **** 39(26). NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 12 sites find / exp.num. 7.330 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 450 454 7.33008 0 0: 0 0 CCAAT 2 727 731 7.33008 0 0: 0 0 CCAAT 3 1421 1425 7.33008 0 0: 0 0 CCAAT 4 1977 1981 7.33008 0 0: 0 0 CCAAT 5 2022 2026 7.33008 0 0: 0 0 CCAAT 6 2983 2987 7.33008 0 0: 0 0 CCAAT 7 3587 3591 7.33008 0 0: 0 0 CCAAT 8 3677 3681 7.33008 0 0: 0 0 CCAAT 9 4661 4665 7.33008 0 0: 0 0 CCAAT 10 4902 4906 7.33008 0 0: 0 0 CCAAT 11 5054 5058 7.33008 0 0: 0 0 CCAAT 12 6375 6379 7.33008 0 0: 0 0 CCAAT AI 00000 2 chain 2 sites find / exp.num. 7.330 interval 12 TD 1 275 271 7.33008 0 0: 0 0 CCAAT 2 3657 3653 7.33008 0 0: 0 0 CCAAT NM **** 40(2). CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.831 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2748 2758 1.83105 0 0: 0 0 TCATCCATCGC 2 4862 4872 1.83105 0 0: 0 0 TTACCCATAAC AI 00000 2 chain 1 sites find / exp.num. 1.831 interval 4 TD 1 3150 3140 1.83105 0 0: 0 0 TTGTCCATAAC NM **** 187(2.) CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.831 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2748 2758 1.83105 0 0: 0 0 TCATCCATCGC 2 4862 4872 1.83105 0 0: 0 0 TTACCCATAAC AI 00000 2 chain 1 sites find / exp.num. 1.831 interval 4 TD 1 3150 3140 1.83105 0 0: 0 0 TTGTCCATAAC NM **** 190(5). ADENOVIRUS EPF FACtOR SQ atgacgt CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 81 87 .45801 0 0: 0 0 ATGACGT 2 1041 1047 .45801 0 0: 0 0 ATGACGT 3 7318 7324 .45801 0 0: 0 0 ATGACGT AI 00000 2 chain 1 sites find / exp.num. .458 interval 2 TD 1 7030 7024 .45801 0 0: 0 0 ATGACGT NM **** 191(6). E4F1 PROTEIN OF ADENOVIRUS SQ aCGTMAc AI 00000 2 chain 1 sites find / exp.num. .916 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2961 2955 .91602 0 0: 0 0 ACGTCAC NM **** 192(7). LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 7.329 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 6230 6235 7.32910 0 0: 0 0 AGAGGC 2 6497 6502 7.32910 0 0: 0 0 AGAGGC AI 00000 2 chain 1 sites find / exp.num. 7.329 interval 12 TD 1 863 858 7.32910 0 0: 0 0 AGAGGC NM **** 193(8). RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 3 sites find / exp.num. 1.831 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1376 1388 1.83057 7 0: 0 0 TGGcaatcaaCCA 2 2825 2837 1.83057 7 0: 0 0 TGGagctcacCCA 3 2840 2852 1.83057 7 0: 0 0 TGGgttgtgcCCA AI 00000 2 chain 3 sites find / exp.num. 1.831 interval 4 TD 1 1388 1376 1.83057 7 0: 0 0 TGGttgattgCCA 2 2837 2825 1.83057 7 0: 0 0 TGGgtgagctCCA 3 2852 2840 1.83057 7 0: 0 0 TGGgcacaacCCA NM **** 195(12). AP1-FACTOR SQ tgaztcag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .229 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4009 4016 .22897 0 0: 0 0 TGACTCAG NM **** 201(21). Binding site for the human transcription factor Sp1 SQ gggcgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 356 361 1.83228 0 0: 0 0 GGGCGG AI 00000 2 chain 1 sites find / exp.num. 1.832 interval 4 TD 1 4384 4379 1.83228 0 0: 0 0 GGGCGG NM **** 207(28).Consensus sequence of several adenoviral promoters located at SQ gyrgytttc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .229 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 358 366 .22894 0 0: 0 0 GCGGCTTTC AI 00000 2 chain 1 sites find / exp.num. .229 interval 1 TD 1 3060 3052 .22894 0 0: 0 0 GCGGTTTTC NM **** 209(30).Site of initiation of translation in genes of animals SQ zaannatgg AI 00000 2 chain 2 sites find / exp.num. .916 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2110 2102 .91577 0 0: 0 0 GAAACATGG 2 6225 6217 .91577 0 0: 0 0 CAATCATGG NM **** 210(32).Optimal sequence for initiation of translation by eukaryotik SQ accatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2417 2423 .45801 0 0: 0 0 ACCATGG AI 00000 2 chain 1 sites find / exp.num. .458 interval 2 TD 1 2424 2418 .45801 0 0: 0 0 ACCATGG NM **** 41(5). HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 883 890 1.83179 0 0: 0 0 TTCCTGAA 2 3305 3312 1.83179 0 0: 0 0 TTCTTGAA 3 3709 3716 1.83179 0 0: 0 0 TTCTCGAA 4 4158 4165 1.83179 0 0: 0 0 TTCTGGAA 5 6624 6631 1.83179 0 0: 0 0 TTCACGAA AI 00000 2 chain 5 sites find / exp.num. 1.832 interval 4 TD 1 890 883 1.83179 0 0: 0 0 TTCAGGAA 2 3312 3305 1.83179 0 0: 0 0 TTCAAGAA 3 3716 3709 1.83179 0 0: 0 0 TTCGAGAA 4 4165 4158 1.83179 0 0: 0 0 TTCCAGAA 5 6631 6624 1.83179 0 0: 0 0 TTCGTGAA NM **** 42(7). heat-shock HSP70 SQ ctcgaatgTTcgcgaaa CC max mismatch : 5 AI 00000 1 chain 1 sites find / exp.num. .372 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3443 3459 .37233 0 5: 5 0 CTCGGTTATTACCGAAA AI 00000 2 chain 1 sites find / exp.num. .372 interval 2 TD 1 3724 3708 .37233 0 5: 5 0 ATTGAGTGTTCGAGAAG NM **** 44(10). HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1171 1177 1.83203 0 0: 0 0 TGCGCCC 2 4847 4853 1.83203 0 0: 0 0 TGCACTC AI 00000 2 chain 1 sites find / exp.num. 1.832 interval 4 TD 1 7043 7037 1.83203 0 0: 0 0 TGCGCCC NM **** 45(26).Site of induction of ions of heavy metals SQ ycgcccgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .229 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 350 357 .22897 0 0: 0 0 TCGCCCGG AI 00000 2 chain 1 sites find / exp.num. .229 interval 1 TD 1 361 354 .22897 0 0: 0 0 CCGCCCGG NM **** 48(33).Consensus sequence of the recognition sites for the glucocorti SQ tgttct AI 00000 2 chain 5 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2382 2377 1.83228 0 0: 0 0 TGTTCT 2 2704 2699 1.83228 0 0: 0 0 TGTTCT 3 3075 3070 1.83228 0 0: 0 0 TGTTCT 4 4314 4309 1.83228 0 0: 0 0 TGTTCT 5 6013 6008 1.83228 0 0: 0 0 TGTTCT NM **** 49(23).Site of "drug" induction of genes P-450c SQ znqrgctggg AI 00000 2 chain 1 sites find / exp.num. .229 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4699 4690 .22891 0 0: 0 0 CGTAGCTGGG NM **** 52(9). ACUTE REACTANT RESPONSIVE ELEMENT SQ xtZtgGgAx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .229 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2866 2874 .22894 0 0: 0 0 TTCTGGGAA NM **** 228(29).Element of promotor of interferone GAMMA SQ aagtgtaat-gagtnnnct CC distance between two blocks of site: min = 4 max = 7 CC max mismatch in 1-st block: 2, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .187 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1538 1561 .18655 6 3: 2 1 AATTGTAAAaccgatGAGTGGAGT NM **** 235(4). CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 7.330 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 4962 4966 7.33008 0 0: 0 0 CCCAC 2 6895 6899 7.33008 0 0: 0 0 CCCAC 3 7016 7020 7.33008 0 0: 0 0 CCCAC AI 00000 2 chain 3 sites find / exp.num. 7.330 interval 12 TD 1 3016 3012 7.33008 0 0: 0 0 CCCAC 2 5452 5448 7.33008 0 0: 0 0 CCCAC 3 6725 6721 7.33008 0 0: 0 0 CCCAC NM **** 236(5). GG.Ar.CC BOX BINDING FACTOR SQ GGxxxxxxCC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3446 3455 .45782 0 0: 0 0 GGTTATTACC AI 00000 2 chain 1 sites find / exp.num. .458 interval 2 TD 1 3455 3446 .45782 0 0: 0 0 GGTAATAACC NM **** 242(11). ANTITROMBIN-III ENHANCER SPECIFIC FACTOR SQ gtGGxxxg AI 00000 2 chain 6 sites find / exp.num. .916 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1515 1508 .91589 0 0: 0 0 GTGGTAAG 2 3845 3838 .91589 0 0: 0 0 GTGGTTTG 3 3993 3986 .91589 0 0: 0 0 GTGGTATG 4 4537 4530 .91589 0 0: 0 0 GTGGTTTG 5 4798 4791 .91589 0 0: 0 0 GTGGTATG 6 5007 5000 .91589 0 0: 0 0 GTGGAATG NM **** 246(15). NF-GMB PROTEIN FOR CYTOKIN 2 SPECIFIC SEQUENCE SQ tyaggrta AI 00000 2 chain 1 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 389 382 .45795 0 0: 0 0 TCAGGATA NM **** 252(21). RIBOSOMAL PROTEIN SPECIFIC MOTIF (JBC v263 n33 p17772) SQ cttccg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2899 2904 1.83228 0 0: 0 0 CTTCCG NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 3.665 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 2897 2902 3.66455 0 0: 0 0 GACTTC 2 3376 3381 3.66455 0 0: 0 0 GATTTC 3 3917 3922 3.66455 0 0: 0 0 GACTTC 4 4194 4199 3.66455 0 0: 0 0 GATTTC 5 6732 6737 3.66455 0 0: 0 0 GACTTC AI 00000 2 chain 2 sites find / exp.num. 3.665 interval 7 TD 1 4108 4103 3.66455 0 0: 0 0 GATTTC 2 6484 6479 3.66455 0 0: 0 0 GATTTC NM **** 254(23). cycle cell 86 45 4 537 544 trt1 SQ GCGAAA CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.832 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 112 117 1.83228 0 0: 0 0 GCGAAA 2 6102 6107 1.83228 0 0: 0 0 GCGAAA 3 6535 6540 1.83228 0 0: 0 0 GCGAAA 4 7349 7354 1.83228 0 0: 0 0 GCGAAA NM **** 255(24). cycle cell 86 45 4 537 544 yeast histone cdc9 SQ cacgaaaa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 540 547 .11449 0 0: 0 0 CACGAAAA 2 2779 2786 .11449 0 0: 0 0 CACGAAAA NM **** 258(27).Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 150 156 .45801 0 0: 0 0 CATTCCT 2 881 887 .45801 0 0: 0 0 CATTCCT 3 5628 5634 .45801 0 0: 0 0 CATTCCT 4 7387 7393 .45801 0 0: 0 0 CATTCCT NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 10 sites find / exp.num. 7.330 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 1212 1216 7.33008 0 0: 0 0 GAAGA 2 2375 2379 7.33008 0 0: 0 0 GAAGA 3 2917 2921 7.33008 0 0: 0 0 GAAGA 4 6144 6148 7.33008 0 0: 0 0 GAAGA 5 6542 6546 7.33008 0 0: 0 0 GAAGA 6 6629 6633 7.33008 0 0: 0 0 GAAGA 7 6854 6858 7.33008 0 0: 0 0 GAAGA 8 6924 6928 7.33008 0 0: 0 0 GAAGA 9 7101 7105 7.33008 0 0: 0 0 GAAGA 10 7143 7147 7.33008 0 0: 0 0 GAAGA AI 00000 2 chain 1 sites find / exp.num. 7.330 interval 12 TD 1 1255 1251 7.33008 0 0: 0 0 GAAGA NM **** 264(33)."CCAAT box";one of a number of homology blocks at the 5'-ends SQ grccaatnr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .458 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3675 3683 .45789 0 0: 0 0 GACCAATAG NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 10 sites find / exp.num. 7.329 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 797 802 7.32910 0 0: 0 0 AAGTGA 2 2080 2085 7.32910 0 0: 0 0 AAATGA 3 2953 2958 7.32910 0 0: 0 0 AAGTGA 4 3907 3912 7.32910 0 0: 0 0 AAGTGA 5 3938 3943 7.32910 0 0: 0 0 AAAGGA 6 4546 4551 7.32910 0 0: 0 0 AAATGA 7 4741 4746 7.32910 0 0: 0 0 AAATGA 8 5158 5163 7.32910 0 0: 0 0 AAGGGA 9 6728 6733 7.32910 0 0: 0 0 AAAGGA 10 6871 6876 7.32910 0 0: 0 0 AAATGA AI 00000 2 chain 7 sites find / exp.num. 7.329 interval 12 TD 1 233 228 7.32910 0 0: 0 0 AAATGA 2 502 497 7.32910 0 0: 0 0 AAAGGA 3 1990 1985 7.32910 0 0: 0 0 AAATGA 4 4441 4436 7.32910 0 0: 0 0 AAGGGA 5 5636 5631 7.32910 0 0: 0 0 AAAGGA 6 6269 6264 7.32910 0 0: 0 0 AAGGGA 7 7470 7465 7.32910 0 0: 0 0 AAATGA NM **** 269(38).Consensus of a sequence found downstream from the cap site of SQ gcttctgr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .229 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2864 2871 .22897 0 0: 0 0 GCTTCTGG NM **** 271(41).Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 7.330 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 6110 6114 7.33008 0 0: 0 0 CGCAC AI 00000 2 chain 2 sites find / exp.num. 7.330 interval 12 TD 1 1132 1128 7.33008 0 0: 0 0 CGCAC 2 1731 1727 7.33008 0 0: 0 0 CGCAC