ID DNTOM DE D.ananassae Tom retrotransposon DNA sequence. NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 120 125 1.72241 0 0: 0 0 TATAAA 2 459 464 1.72241 0 0: 0 0 TATAAA 3 1144 1149 1.72241 0 0: 0 0 TATAAA 4 2328 2333 1.72241 0 0: 0 0 TATAAA 5 2502 2507 1.72241 0 0: 0 0 TATAAA 6 6333 6338 1.72241 0 0: 0 0 TATAAA 7 6456 6461 1.72241 0 0: 0 0 TATAAA 8 6706 6711 1.72241 0 0: 0 0 TATAAA 9 7045 7050 1.72241 0 0: 0 0 TATAAA AI 00000 2 chain 6 sites find / exp.num. 1.722 interval 4 TD 1 546 541 1.72241 0 0: 0 0 TATAAA 2 1627 1622 1.72241 0 0: 0 0 TATAAA 3 4830 4825 1.72241 0 0: 0 0 TATAAA 4 5986 5981 1.72241 0 0: 0 0 TATAAA 5 6370 6365 1.72241 0 0: 0 0 TATAAA 6 6447 6442 1.72241 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 10 sites find / exp.num. 6.889 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 93 99 6.88867 0 0: 0 0 ATCATTT 2 228 234 6.88867 0 0: 0 0 CTCATTC 3 286 292 6.88867 0 0: 0 0 ATCAGTC 4 2021 2027 6.88867 0 0: 0 0 TTCAGTC 5 3880 3886 6.88867 0 0: 0 0 ATCATTT 6 4098 4104 6.88867 0 0: 0 0 TTCATTT 7 4209 4215 6.88867 0 0: 0 0 CTCATTT 8 6679 6685 6.88867 0 0: 0 0 ATCATTT 9 6814 6820 6.88867 0 0: 0 0 CTCATTC 10 6872 6878 6.88867 0 0: 0 0 ATCAGTC AI 00000 2 chain 17 sites find / exp.num. 6.889 interval 11 TD 1 133 127 6.88867 0 0: 0 0 GTCATTT 2 1136 1130 6.88867 0 0: 0 0 ATCATTC 3 1425 1419 6.88867 0 0: 0 0 CTCATTT 4 2660 2654 6.88867 0 0: 0 0 CTCATTT 5 2813 2807 6.88867 0 0: 0 0 TTCATTT 6 3340 3334 6.88867 0 0: 0 0 GTCATTC 7 3614 3608 6.88867 0 0: 0 0 GTCATTC 8 4306 4300 6.88867 0 0: 0 0 GTCATTT 9 4373 4367 6.88867 0 0: 0 0 CTCATTT 10 4760 4754 6.88867 0 0: 0 0 TTCATTT 11 4955 4949 6.88867 0 0: 0 0 ATCATTT 12 5414 5408 6.88867 0 0: 0 0 ATCAGTT 13 5973 5967 6.88867 0 0: 0 0 ATCATTT 14 6344 6338 6.88867 0 0: 0 0 ATCATTT 15 6480 6474 6.88867 0 0: 0 0 TTCAGTT 16 6510 6504 6.88867 0 0: 0 0 TTCATTT 17 6719 6713 6.88867 0 0: 0 0 GTCATTT NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 16 sites find / exp.num. 6.891 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 525 529 6.89063 0 0: 0 0 GGAAA 2 580 584 6.89063 0 0: 0 0 GGAAA 3 1204 1208 6.89063 0 0: 0 0 GGAAA 4 2495 2499 6.89063 0 0: 0 0 GGAAA 5 2767 2771 6.89063 0 0: 0 0 GGAAA 6 2862 2866 6.89063 0 0: 0 0 GGAAA 7 2871 2875 6.89063 0 0: 0 0 GGAAA 8 3829 3833 6.89063 0 0: 0 0 GGAAA 9 4026 4030 6.89063 0 0: 0 0 GGAAA 10 4169 4173 6.89063 0 0: 0 0 GGAAA 11 4608 4612 6.89063 0 0: 0 0 GGAAA 12 4814 4818 6.89063 0 0: 0 0 GGAAA 13 5010 5014 6.89063 0 0: 0 0 GGAAA 14 5353 5357 6.89063 0 0: 0 0 GGAAA 15 5562 5566 6.89063 0 0: 0 0 GGAAA 16 6184 6188 6.89063 0 0: 0 0 GGAAA AI 00000 2 chain 8 sites find / exp.num. 6.891 interval 11 TD 1 1730 1726 6.89063 0 0: 0 0 GGAAA 2 2836 2832 6.89063 0 0: 0 0 GGAAA 3 3110 3106 6.89063 0 0: 0 0 GGAAA 4 3708 3704 6.89063 0 0: 0 0 GGAAA 5 4106 4102 6.89063 0 0: 0 0 GGAAA 6 4335 4331 6.89063 0 0: 0 0 GGAAA 7 4652 4648 6.89063 0 0: 0 0 GGAAA 8 6348 6344 6.89063 0 0: 0 0 GGAAA NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 32 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 349 354 1.72241 0 0: 0 0 AATAAA 2 356 361 1.72241 0 0: 0 0 AATAAA 3 529 534 1.72241 0 0: 0 0 AATAAA 4 584 589 1.72241 0 0: 0 0 AATAAA 5 694 699 1.72241 0 0: 0 0 AATAAA 6 747 752 1.72241 0 0: 0 0 AATAAA 7 754 759 1.72241 0 0: 0 0 AATAAA 8 761 766 1.72241 0 0: 0 0 AATAAA 9 768 773 1.72241 0 0: 0 0 AATAAA 10 776 781 1.72241 0 0: 0 0 AATAAA 11 781 786 1.72241 0 0: 0 0 AATAAA 12 787 792 1.72241 0 0: 0 0 AATAAA 13 793 798 1.72241 0 0: 0 0 AATAAA 14 1459 1464 1.72241 0 0: 0 0 AATAAA 15 1480 1485 1.72241 0 0: 0 0 AATAAA 16 2304 2309 1.72241 0 0: 0 0 AATAAA 17 2321 2326 1.72241 0 0: 0 0 AATAAA 18 3251 3256 1.72241 0 0: 0 0 AATAAA 19 3953 3958 1.72241 0 0: 0 0 AATAAA 20 4547 4552 1.72241 0 0: 0 0 AATAAA 21 4751 4756 1.72241 0 0: 0 0 AATAAA 22 4937 4942 1.72241 0 0: 0 0 AATAAA 23 5037 5042 1.72241 0 0: 0 0 AATAAA 24 5328 5333 1.72241 0 0: 0 0 AATAAA 25 5571 5576 1.72241 0 0: 0 0 AATAAA 26 5974 5979 1.72241 0 0: 0 0 AATAAA 27 6030 6035 1.72241 0 0: 0 0 AATAAA 28 6177 6182 1.72241 0 0: 0 0 AATAAA 29 6187 6192 1.72241 0 0: 0 0 AATAAA 30 6306 6311 1.72241 0 0: 0 0 AATAAA 31 6935 6940 1.72241 0 0: 0 0 AATAAA 32 6942 6947 1.72241 0 0: 0 0 AATAAA AI 00000 2 chain 11 sites find / exp.num. 1.722 interval 4 TD 1 395 390 1.72241 0 0: 0 0 AATAAA 2 400 395 1.72241 0 0: 0 0 AATAAA 3 448 443 1.72241 0 0: 0 0 AATAAA 4 1303 1298 1.72241 0 0: 0 0 AATAAA 5 2521 2516 1.72241 0 0: 0 0 AATAAA 6 2622 2617 1.72241 0 0: 0 0 AATAAA 7 3087 3082 1.72241 0 0: 0 0 AATAAA 8 4219 4214 1.72241 0 0: 0 0 AATAAA 9 6981 6976 1.72241 0 0: 0 0 AATAAA 10 6986 6981 1.72241 0 0: 0 0 AATAAA 11 7034 7029 1.72241 0 0: 0 0 AATAAA NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 6.891 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 3441 3445 6.89063 0 0: 0 0 TATGT AI 00000 2 chain 21 sites find / exp.num. 6.891 interval 11 TD 1 9 5 6.89063 0 0: 0 0 TATGT 2 996 992 6.89063 0 0: 0 0 TATGT 3 1065 1061 6.89063 0 0: 0 0 TATGT 4 1444 1440 6.89063 0 0: 0 0 TATGT 5 2228 2224 6.89063 0 0: 0 0 TATGT 6 3050 3046 6.89063 0 0: 0 0 TATGT 7 3380 3376 6.89063 0 0: 0 0 TATGT 8 3428 3424 6.89063 0 0: 0 0 TATGT 9 3747 3743 6.89063 0 0: 0 0 TATGT 10 3824 3820 6.89063 0 0: 0 0 TATGT 11 3906 3902 6.89063 0 0: 0 0 TATGT 12 4746 4742 6.89063 0 0: 0 0 TATGT 13 4883 4879 6.89063 0 0: 0 0 TATGT 14 4976 4972 6.89063 0 0: 0 0 TATGT 15 5348 5344 6.89063 0 0: 0 0 TATGT 16 5802 5798 6.89063 0 0: 0 0 TATGT 17 5866 5862 6.89063 0 0: 0 0 TATGT 18 6174 6170 6.89063 0 0: 0 0 TATGT 19 6300 6296 6.89063 0 0: 0 0 TATGT 20 6429 6425 6.89063 0 0: 0 0 TATGT 21 6595 6591 6.89063 0 0: 0 0 TATGT NM **** 10.(18) ORI HUM SQ taaatttagt AI 00000 2 chain 1 sites find / exp.num. .208 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4989 4980 .20846 0 1: 1 0 TAAATTTGGT NM **** 13.(19) ARS Y XE DM SQ xtttatrtttx CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .377 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4824 4834 .37651 0 1: 1 0 CTTTATATTTA 2 6441 6451 .01345 0 0: 0 0 ATTTATATTTT AI 00000 2 chain 20 sites find / exp.num. .377 interval 2 TD 1 465 455 .37651 0 1: 1 0 GTTTATATTTT 2 737 727 .37651 0 1: 1 0 TTTGATGTTTT 3 760 750 .37651 0 1: 1 0 TTTTATTTTTT 4 762 752 .37651 0 1: 1 0 TTTTTTATTTT 5 767 757 .37651 0 1: 1 0 TTTTATTTTTT 6 769 759 .37651 0 1: 1 0 TTTTTTATTTT 7 774 764 .37651 0 1: 1 0 TTTTATTTTTT 8 776 766 .37651 0 1: 1 0 TTTTTTATTTT 9 782 772 .37651 0 1: 1 0 TTTTATTTTTT 10 789 779 .37651 0 1: 1 0 ATTTTTATTTT 11 793 783 .37651 0 1: 1 0 TTTTATTTTTA 12 795 785 .37651 0 1: 1 0 ATTTTTATTTT 13 799 789 .37651 0 1: 1 0 TTTTATTTTTA 14 806 796 .37651 0 1: 1 0 TTTTAAATTTT 15 1486 1476 .37651 0 1: 1 0 TTTTATTTTTA 16 2334 2324 .37651 0 1: 1 0 TTTTATAATTT 17 5045 5035 .37651 0 1: 1 0 ATTTTTATTTT 18 5369 5359 .37651 0 1: 1 0 TTTTGTATTTT 19 6314 6304 .37651 0 1: 1 0 ATTTTTATTTT 20 7051 7041 .37651 0 1: 1 0 GTTTATATTTT NM **** 14.(24) ARS yeast, xenopus SQ xttttatrtttx CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .104 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4823 4834 .10420 0 1: 1 0 TCTTTATATTTA AI 00000 2 chain 12 sites find / exp.num. .104 interval 1 TD 1 466 455 .10420 0 1: 1 0 AGTTTATATTTT 2 761 750 .10420 0 1: 1 0 TTTTTATTTTTT 3 763 752 .10420 0 1: 1 0 ATTTTTTATTTT 4 768 757 .10420 0 1: 1 0 TTTTTATTTTTT 5 770 759 .10420 0 1: 1 0 ATTTTTTATTTT 6 775 764 .10420 0 1: 1 0 TTTTTATTTTTT 7 777 766 .10420 0 1: 1 0 TTTTTTTATTTT 8 783 772 .10420 0 1: 1 0 ATTTTATTTTTT 9 794 783 .10420 0 1: 1 0 TTTTTATTTTTA 10 800 789 .10420 0 1: 1 0 ATTTTATTTTTA 11 807 796 .10420 0 1: 1 0 TTTTTAAATTTT 12 7052 7041 .10420 0 1: 1 0 AGTTTATATTTT NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 22 sites find / exp.num. .390 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 68 77 .39001 0 1: 1 0 AGTAAACAAA 2 120 129 .39001 0 1: 1 0 TATAAACAAA 3 349 358 .39001 0 1: 1 0 AATAAATAAT 4 356 365 .39001 0 1: 1 0 AATAAATAAC 5 529 538 .39001 0 1: 1 0 AATAAATTAA 6 750 759 .39001 0 1: 1 0 AAAAAATAAA 7 757 766 .39001 0 1: 1 0 AAAAAATAAA 8 764 773 .39001 0 1: 1 0 AAAAAATAAA 9 768 777 .39001 0 1: 1 0 AATAAAAAAA 10 772 781 .39001 0 1: 1 0 AAAAAATAAA 11 1455 1464 .39001 0 1: 1 0 AACAAATAAA 12 2519 2528 .39001 0 1: 1 0 ATTAAACAAA 13 3062 3071 .39001 0 1: 1 0 AATTAACAAA 14 3966 3975 .39001 0 1: 1 0 AAAAAACAAA 15 4543 4552 .39001 0 1: 1 0 AACAAATAAA 16 4751 4760 .39001 0 1: 1 0 AATAAATGAA 17 4933 4942 .39001 0 1: 1 0 AAAAAATAAA 18 4937 4946 .01345 0 0: 0 0 AATAAACAAA 19 6654 6663 .39001 0 1: 1 0 AGTAAACAAA 20 6706 6715 .39001 0 1: 1 0 TATAAACAAA 21 6935 6944 .39001 0 1: 1 0 AATAAATAAT 22 6942 6951 .39001 0 1: 1 0 AATAAATAAC AI 00000 2 chain 2 sites find / exp.num. .390 interval 2 TD 1 1303 1294 .39001 0 1: 1 0 AATAAATAAT 2 3087 3078 .39001 0 1: 1 0 AATAAACTAA NM **** 16.(23) SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .054 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 391 400 .05379 0 0: 0 0 TTATTTTATT 2 6443 6452 .05379 0 0: 0 0 TTATATTTTT 3 6977 6986 .05379 0 0: 0 0 TTATTTTATT AI 00000 2 chain 38 sites find / exp.num. .054 interval 1 TD 1 760 751 .05379 0 0: 0 0 TTTTATTTTT 2 767 758 .05379 0 0: 0 0 TTTTATTTTT 3 774 765 .05379 0 0: 0 0 TTTTATTTTT 4 777 768 .05379 0 0: 0 0 TTTTTTTATT 5 780 771 .05379 0 0: 0 0 TTATTTTTTT 6 782 773 .05379 0 0: 0 0 TTTTATTTTT 7 785 776 .05379 0 0: 0 0 TTATTTTATT 8 793 784 .05379 0 0: 0 0 TTTTATTTTT 9 799 790 .05379 0 0: 0 0 TTTTATTTTT 10 812 803 .05379 0 0: 0 0 TTTTTTTTTT 11 813 804 .05379 0 0: 0 0 TTTTTTTTTT 12 814 805 .05379 0 0: 0 0 TTTTTTTTTT 13 815 806 .05379 0 0: 0 0 TTTTTTTTTT 14 816 807 .05379 0 0: 0 0 TTTTTTTTTT 15 817 808 .05379 0 0: 0 0 TTTTTTTTTT 16 818 809 .05379 0 0: 0 0 TTTTTTTTTT 17 819 810 .05379 0 0: 0 0 TTTTTTTTTT 18 820 811 .05379 0 0: 0 0 TTTTTTTTTT 19 821 812 .05379 0 0: 0 0 TTTTTTTTTT 20 822 813 .05379 0 0: 0 0 TTTTTTTTTT 21 823 814 .05379 0 0: 0 0 TTTTTTTTTT 22 824 815 .05379 0 0: 0 0 TTTTTTTTTT 23 825 816 .05379 0 0: 0 0 TTTTTTTTTT 24 826 817 .05379 0 0: 0 0 TTTTTTTTTT 25 827 818 .05379 0 0: 0 0 TTTTTTTTTT 26 828 819 .05379 0 0: 0 0 TTTTTTTTTT 27 829 820 .05379 0 0: 0 0 TTTTTTTTTT 28 830 821 .05379 0 0: 0 0 TTTTTTTTTT 29 831 822 .05379 0 0: 0 0 TTTTTTTTTT 30 832 823 .05379 0 0: 0 0 TTTTTTTTTT 31 833 824 .05379 0 0: 0 0 TTTTTTTTTT 32 834 825 .05379 0 0: 0 0 TTTTTTTTTT 33 835 826 .05379 0 0: 0 0 TTTTTTTTTT 34 836 827 .05379 0 0: 0 0 TTTTTTTTTT 35 837 828 .05379 0 0: 0 0 TTTTTTTTTT 36 838 829 .05379 0 0: 0 0 TTTTTTTTTT 37 839 830 .05379 0 0: 0 0 TTTTTTTTTT 38 1486 1477 .05379 0 0: 0 0 TTTTATTTTT NM **** 18(32).optimal sequence for initiation of translation by eukaryotik SQ accatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .431 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 5243 5249 .43054 0 0: 0 0 ACCATGG NM **** 55(3). ANIMAL POLIMERASE II SQ ggycaatct-tataxax CC distance between two blocks of site: min = 19 max = 61 CC max mismatch in 1-st block: 1, in 2-nd block: 1 AI 00000 1 chain 2 sites find / exp.num. .263 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2394 2451 .26257 42 2: 1 1 GGTCAATTTttctacacacaagattcatatgagaaaccaatccccaaatcaGATAAAA 2 2394 2453 .26257 44 2: 1 1 GGTCAATTTttctacacacaagattcatatgagaaaccaatccccaaatcagaTAAAAAA AI 00000 2 chain 2 sites find / exp.num. .263 interval 0 TD 1 3797 3741 .26257 41 2: 1 1 AGCCAATCTaattctccatctctgcagtttggcatttggctcctttaaatTATGTAA 2 3797 3748 .26257 34 2: 1 1 AGCCAATCTaattctccatctctgcagtttggcatttggctccTTTAAAT NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.721 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3220 3229 1.72144 0 0: 0 0 CCTTTCTAGG AI 00000 2 chain 3 sites find / exp.num. 1.721 interval 4 TD 1 1205 1196 1.72144 0 0: 0 0 CCCTTGTAGG 2 3212 3203 1.72144 0 0: 0 0 CTTTTTCAGG 3 4171 4162 1.72144 0 0: 0 0 TCCCTATAGG NM **** 62(13). AUTO SPLACING SQ ctgangangnc-gncgaaac AI 00000 2 chain 1 sites find / exp.num. .160 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5528 5501 .15965 9 3: 2 1 CTGTCGTTGTCgtcgagtgtGCCGAAAA NM **** 64(17). ORI MT !!! SQ trtgytytr AI 00000 2 chain 3 sites find / exp.num. .430 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2314 2306 .43042 0 0: 0 0 TGTGCTTTA 2 4407 4399 .43042 0 0: 0 0 TGTGTTCTG 3 6325 6317 .43042 0 0: 0 0 TGTGTTTTA NM **** 67(26).ARS-fragment of chlamydomonada SQ raattttaaat AI 00000 2 chain 1 sites find / exp.num. .108 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1525 1515 .10757 0 1: 1 0 AATTTTTAAAT NM **** 68(27).ARS of chloroplasts SQ anrtnaccaagt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .390 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1342 1353 .38990 0 1: 1 0 AAATTACCAATT NM **** 69(28).ARS of human SQ tattyytaaatttagtxt CC max mismatch : 4 AI 00000 1 chain 2 sites find / exp.num. .137 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 373 390 .01344 0 3: 3 0 TTTTTTTAAAATTGGTTT 2 6959 6976 .01344 0 3: 3 0 TTTTTTTAAAATTGGTTT AI 00000 2 chain 8 sites find / exp.num. .137 interval 1 TD 1 549 532 .13667 0 4: 4 0 GATTATAAAATTTAATTT 2 639 622 .13667 0 4: 4 0 AGTTTTTGAATTTTGTTT 3 779 762 .13667 0 4: 4 0 TATTTTTTTATTTTTTAT 4 796 779 .01344 0 3: 3 0 TATTTTTATTTTTATTTT 5 808 791 .13667 0 4: 4 0 TTTTTTAAATTTTATTTT 6 809 792 .01344 0 3: 3 0 TTTTTTTAAATTTTATTT 7 1483 1466 .01344 0 3: 3 0 TATTTTTAATTTCAATAT 8 4995 4978 .13667 0 4: 4 0 CCTTTCTAAATTTGGTGT NM **** 70(29).conservative sequence of ORI of adenovirus (AD) SQ cxnymtmxataatataccyyay CC max mismatch : 5 AI 00000 1 chain 2 sites find / exp.num. .488 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2318 2339 .48821 0 5: 5 0 TATAATAAATTATAAAACTCAT 2 5892 5913 .48821 0 5: 5 0 CACTATTAAAATAATCCCTTAT AI 00000 2 chain 1 sites find / exp.num. .488 interval 2 TD 1 4833 4812 .48821 0 5: 5 0 AAATATAAAGAATATTTTCCAT NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 6.891 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 3728 3732 6.89063 0 0: 0 0 GCCTC 2 4207 4211 6.89063 0 0: 0 0 GCCTC AI 00000 2 chain 3 sites find / exp.num. 6.891 interval 11 TD 1 914 910 6.89063 0 0: 0 0 GCCTC 2 1232 1228 6.89063 0 0: 0 0 GCCTC 3 5561 5557 6.89063 0 0: 0 0 GCCTC NM **** 72(33).consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 20 sites find / exp.num. .377 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 455 465 .37651 0 1: 1 0 AAAATATAAAC 2 727 737 .37651 0 1: 1 0 AAAACATCAAA 3 750 760 .37651 0 1: 1 0 AAAAAATAAAA 4 752 762 .37651 0 1: 1 0 AAAATAAAAAA 5 757 767 .37651 0 1: 1 0 AAAAAATAAAA 6 759 769 .37651 0 1: 1 0 AAAATAAAAAA 7 764 774 .37651 0 1: 1 0 AAAAAATAAAA 8 766 776 .37651 0 1: 1 0 AAAATAAAAAA 9 772 782 .37651 0 1: 1 0 AAAAAATAAAA 10 779 789 .37651 0 1: 1 0 AAAATAAAAAT 11 783 793 .37651 0 1: 1 0 TAAAAATAAAA 12 785 795 .37651 0 1: 1 0 AAAATAAAAAT 13 789 799 .37651 0 1: 1 0 TAAAAATAAAA 14 796 806 .37651 0 1: 1 0 AAAATTTAAAA 15 1476 1486 .37651 0 1: 1 0 TAAAAATAAAA 16 2324 2334 .37651 0 1: 1 0 AAATTATAAAA 17 5035 5045 .37651 0 1: 1 0 AAAATAAAAAT 18 5359 5369 .37651 0 1: 1 0 AAAATACAAAA 19 6304 6314 .37651 0 1: 1 0 AAAATAAAAAT 20 7041 7051 .37651 0 1: 1 0 AAAATATAAAC AI 00000 2 chain 2 sites find / exp.num. .377 interval 2 TD 1 4834 4824 .37651 0 1: 1 0 TAAATATAAAG 2 6451 6441 .01345 0 0: 0 0 AAAATATAAAT NM **** 76(4a).sequence common for transcription initiation sites of rRNA gen SQ trctgacacgctgtcctyt CC max mismatch : 5 AI 00000 1 chain 1 sites find / exp.num. .221 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3845 3863 .22140 0 5: 5 0 TGCTGACGCACTGTCCAGA NM **** 80(11a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2737 2742 1.72241 0 0: 0 0 GGGTTG AI 00000 2 chain 4 sites find / exp.num. 1.722 interval 4 TD 1 1587 1582 1.72241 0 0: 0 0 GGGTTG 2 1653 1648 1.72241 0 0: 0 0 GGGTTG 3 4908 4903 1.72241 0 0: 0 0 GGGTTG 4 5753 5748 1.72241 0 0: 0 0 GGGTTG NM **** 81(12a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttttg AI 00000 2 chain 1 sites find / exp.num. .108 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3389 3382 .10762 0 0: 0 0 GGGTTTTG NM **** 82(13a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg AI 00000 2 chain 2 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1566 1561 1.72241 0 0: 0 0 TTGGGG 2 2440 2435 1.72241 0 0: 0 0 TTGGGG NM **** 85(16a).one of two suggested consensus sequences for RNA-polymerase I SQ ggttgg AI 00000 2 chain 4 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1101 1096 1.72241 0 0: 0 0 GGTTGG 2 1553 1548 1.72241 0 0: 0 0 GGTTGG 3 1652 1647 1.72241 0 0: 0 0 GGTTGG 4 4907 4902 1.72241 0 0: 0 0 GGTTGG NM **** 87(18a).one of two suggested consensus sequences for RNA-polymerase I SQ ggttttgg AI 00000 2 chain 2 sites find / exp.num. .108 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 264 257 .10762 0 0: 0 0 GGTTTTGG 2 6850 6843 .10762 0 0: 0 0 GGTTTTGG NM **** 97(28a).consensus sequence of human mitochondrial promoters SQ canaccccaaagaya CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .483 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2030 2044 .48329 0 3: 3 0 CAGCCCCGGAAGATA NM **** 99(31a).putative regulatory sequence(promoter element) present in SQ gggnggrr CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 6578 6585 1.72192 0 0: 0 0 GGGGGGAG 2 6581 6588 1.72192 0 0: 0 0 GGGAGGAG NM **** 100(32a).consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .215 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6333 6340 .21524 0 0: 0 0 TATAAAAA NM **** 101(33a)."Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2328 2334 1.72217 0 0: 0 0 TATAAAA 2 2502 2508 1.72217 0 0: 0 0 TATAAAT 3 6333 6339 1.72217 0 0: 0 0 TATAAAA 4 6454 6460 1.72217 0 0: 0 0 TATATAA 5 6456 6462 1.72217 0 0: 0 0 TATAAAA AI 00000 2 chain 4 sites find / exp.num. 1.722 interval 4 TD 1 546 540 1.72217 0 0: 0 0 TATAAAA 2 1627 1621 1.72217 0 0: 0 0 TATAAAT 3 5986 5980 1.72217 0 0: 0 0 TATAAAT 4 6447 6441 1.72217 0 0: 0 0 TATAAAT NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 6.891 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 549 553 6.89063 0 0: 0 0 CCGCA NM **** 112(5b).2nd binding-region of big T-antigene in begining of SQ gtagtgaggaggttttttggaggcctaggct AI 00000 2 chain 1 sites find / exp.num. .142 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3689 3659 .00469 0 10:10 0 GTAGTGACGGAATGTTTTTGTGGCCCAAACT NM **** 113(6b).Sequence located at the 3'-ends of yeast genes,presumably SQ tttttata AI 00000 2 chain 1 sites find / exp.num. .108 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6340 6333 .10762 0 0: 0 0 TTTTTATA NM **** 114(7b).Termination of transcription of RNA polymerase I of mouse SQ aggtcgaccagxxntccg AI 00000 2 chain 1 sites find / exp.num. .248 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1120 1103 .24824 0 4: 4 0 AGGTCGGCCAGTCTTCTA NM **** 120(15b).Site of transcription termination mRNA in Hela cells SQ aaaaaaaaattaaaaataaaataaaataaaaaa CC max mismatch : 5 AI 00000 1 chain 8 sites find / exp.num. .000 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 779 811 .00000 0 5: 5 0 AAAATAAAAATAAAAATAAAATTTAAAAAAAAA 2 791 823 .00000 0 5: 5 0 AAAATAAAATTTAAAAAAAAAAAAAAAAAAAAA 3 792 824 .00000 0 5: 5 0 AAATAAAATTTAAAAAAAAAAAAAAAAAAAAAA 4 803 835 .00000 0 5: 5 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5 804 836 .00000 0 5: 5 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6 805 837 .00000 0 5: 5 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7 806 838 .00000 0 5: 5 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8 807 839 .00000 0 5: 5 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA NM **** 121(16b).Consensus of a presumed polyadenylation signal in Trypanosom SQ aaaattyt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .215 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2015 2022 .21524 0 0: 0 0 AAAATTTT AI 00000 2 chain 2 sites find / exp.num. .215 interval 1 TD 1 2022 2015 .21524 0 0: 0 0 AAAATTTT 2 2132 2125 .21524 0 0: 0 0 AAAATTCT NM **** 125(23b).Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 3.444 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 1267 1273 3.44434 0 0: 0 0 CATCTGG 2 5160 5166 3.44434 0 0: 0 0 TATCTGG AI 00000 2 chain 1 sites find / exp.num. 3.444 interval 7 TD 1 4589 4583 3.44434 0 0: 0 0 CATCAGG NM **** 126(24b)."Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr AI 00000 2 chain 1 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3613 3607 1.72217 0 0: 0 0 TCATTCA NM **** 128(26b).Sequence present near the 3'-ends of yeast mitochondrial gen SQ aagaatat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .108 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1919 1926 .10762 0 0: 0 0 AAGAATAT AI 00000 2 chain 1 sites find / exp.num. .108 interval 1 TD 1 4826 4819 .10762 0 0: 0 0 AAGAATAT NM **** 129(27b).Consensus of a presumed transcription processing signal of m SQ ataatattctt CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3975 3985 .05715 0 1: 1 0 ATAATATTCAT 2 4816 4826 .05715 0 1: 1 0 AAAATATTCTT AI 00000 2 chain 1 sites find / exp.num. .057 interval 1 TD 1 1929 1919 .05715 0 1: 1 0 GTAATATTCTT NM **** 131(29b).Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg AI 00000 2 chain 1 sites find / exp.num. .861 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3212 3203 .86072 0 0: 0 0 CTTTTTCAGG NM **** 132(33b).Brunch : PNAS (1984) V 81 N 23 P 7417 H SQ uacuaac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .431 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 5096 5102 .43054 0 0: 0 0 TACTAAC NM **** 134(35b).Site of splising of plants 3'-end: NAR (1986) V 14 N 24 P 95 SQ tttkttkkkktgcagg CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .234 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1294 1309 .23388 0 2: 2 0 ATTATTTATTTGCAAG NM **** 135(37b).Conservative blocks in selfsplising introns 1 group A: SQ augcuggaaa AI 00000 2 chain 1 sites find / exp.num. .208 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4657 4648 .20846 0 1: 1 0 AGGCTGGAAA NM **** 136(38b).Conservative blocks in selfsplising introns 1 group B SQ aatcagcagg CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .208 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2108 2117 .20846 0 1: 1 0 AATCAGCATG NM **** 137(39b).Conservative blocks in selfsplising introns 1 group box 9L: SQ tcagagactaca CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .265 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 877 888 .26512 0 2: 2 0 CCAGAGAATACA 2 4733 4744 .26512 0 2: 2 0 TGAGAGATTACA NM **** 139(41b).Consensus sequence found in the same location in intervening SQ aaaatctt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .108 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6310 6317 .10762 0 0: 0 0 AAAATCTT AI 00000 2 chain 2 sites find / exp.num. .108 interval 1 TD 1 272 265 .10762 0 0: 0 0 AAAATCTT 2 6858 6851 .10762 0 0: 0 0 AAAATCTT NM **** 19(5). SECOND MOTIF OF Ad5 E1a SQ zgcgxaa AI 00000 2 chain 1 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 4895 4889 1.72217 0 0: 0 0 GGCGTAA NM **** 21(12). Mol.Cel.Biol. v62 n8 p1925 E2-PROTEINE OF PAPILLOMPAVIRUS SQ acc-ggt CC distance between two blocks of site: min = 6 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 1.721 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2061 2072 1.72095 6 0: 0 0 ACCcacaagGGT AI 00000 2 chain 1 sites find / exp.num. 1.721 interval 4 TD 1 2072 2061 1.72095 6 0: 0 0 ACCcttgtgGGT NM **** 22(18). PNAS v84 n5 p1272 H21.3.5 PROTEIN BINDING SITE IN c-FOS ENHAN SQ cccgtc AI 00000 2 chain 2 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 439 434 1.72241 0 0: 0 0 CCCGTC 2 7025 7020 1.72241 0 0: 0 0 CCCGTC NM **** 23(19). EMBO J. v4 n10 p2669 H21.3.9 HSV-1/Herpesvirus samuiri SQ taatgarattc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .108 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5841 5851 .10757 0 1: 1 0 TAATGAAATAC NM **** 25(25). LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1963 1968 1.72241 0 0: 0 0 GAACAG AI 00000 2 chain 1 sites find / exp.num. 1.722 interval 4 TD 1 5748 5743 1.72241 0 0: 0 0 GAACAG NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 6.891 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 1038 1042 6.89063 0 0: 0 0 CCTGC AI 00000 2 chain 2 sites find / exp.num. 6.891 interval 11 TD 1 2679 2675 6.89063 0 0: 0 0 CCTGC 2 2694 2690 6.89063 0 0: 0 0 CCTGC NM **** 28(34). INTERFERONE BETA ENHANCER (J.Mol Biol v204 n2 p221) SQ aaxanngaaaggr CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .202 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4984 4996 .20164 0 1: 1 0 AATTTAGAAAGGG 2 5122 5134 .20164 0 1: 1 0 AAAAACGAAAGAA NM **** 33(57).Conservative elements of Ig enchanser (B,E1,E2,E3) SQ gccatctggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .208 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2996 3005 .20846 0 1: 1 0 GCCATTTGGC NM **** 34(60).potential core sequence of enhancers of various human viruses SQ cxxxccac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .861 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 5149 5156 .86096 0 0: 0 0 CATTCCAC NM **** 35(63).enhancer core SV40 SQ tGTGgxxx AI 00000 2 chain 5 sites find / exp.num. .861 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1154 1147 .86096 0 0: 0 0 TGTGGTTT 2 3113 3106 .86096 0 0: 0 0 TGTGGAAA 3 4043 4036 .86096 0 0: 0 0 TGTGGTTA 4 5157 5150 .86096 0 0: 0 0 TGTGGAAT 5 5346 5339 .86096 0 0: 0 0 TGTGGTTA NM **** 145(8). SV40 ENHANCER CORE SQ tgtggxxxg AI 00000 2 chain 1 sites find / exp.num. .215 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5157 5149 .21521 0 0: 0 0 TGTGGAATG NM **** 154(20). Mol.Cel.Biol. v5 n4 p649 H21.3.3 SQ ccaccca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .431 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3895 3901 .43054 0 0: 0 0 CCACCCA NM **** 163(32). LYSOZYME SILENCER 3 (EMBO J v6 n8 p2298) SQ ancaaTgGct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .027 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 4666 4675 .02690 0 0: 0 0 AGCAATGGCT NM **** 166(37).Consensus enchanser region of virus SV40 SQ rrtgtggxxx AI 00000 2 chain 1 sites find / exp.num. .215 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3115 3106 .21518 0 0: 0 0 GATGTGGAAA NM **** 178(53).Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ gtcatgtggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .208 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1070 1079 .20846 0 1: 1 0 GTCATGTGAC NM **** 186(64).Direct repeat in mielin proteolipid genes SQ gggaggagrrg CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .202 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6578 6588 .20170 0 1: 1 0 GGGGGGAGGAG NM **** 39(26). NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 24 sites find / exp.num. 6.891 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 37 41 6.89063 0 0: 0 0 CCAAT 2 52 56 6.89063 0 0: 0 0 CCAAT 3 305 309 6.89063 0 0: 0 0 CCAAT 4 591 595 6.89063 0 0: 0 0 CCAAT 5 1013 1017 6.89063 0 0: 0 0 CCAAT 6 1348 1352 6.89063 0 0: 0 0 CCAAT 7 1528 1532 6.89063 0 0: 0 0 CCAAT 8 1542 1546 6.89063 0 0: 0 0 CCAAT 9 1563 1567 6.89063 0 0: 0 0 CCAAT 10 1705 1709 6.89063 0 0: 0 0 CCAAT 11 1736 1740 6.89063 0 0: 0 0 CCAAT 12 1978 1982 6.89063 0 0: 0 0 CCAAT 13 2045 2049 6.89063 0 0: 0 0 CCAAT 14 2142 2146 6.89063 0 0: 0 0 CCAAT 15 2430 2434 6.89063 0 0: 0 0 CCAAT 16 3294 3298 6.89063 0 0: 0 0 CCAAT 17 3486 3490 6.89063 0 0: 0 0 CCAAT 18 3502 3506 6.89063 0 0: 0 0 CCAAT 19 3951 3955 6.89063 0 0: 0 0 CCAAT 20 5272 5276 6.89063 0 0: 0 0 CCAAT 21 5931 5935 6.89063 0 0: 0 0 CCAAT 22 6623 6627 6.89063 0 0: 0 0 CCAAT 23 6638 6642 6.89063 0 0: 0 0 CCAAT 24 6891 6895 6.89063 0 0: 0 0 CCAAT AI 00000 2 chain 8 sites find / exp.num. 6.891 interval 11 TD 1 387 383 6.89063 0 0: 0 0 CCAAT 2 1090 1086 6.89063 0 0: 0 0 CCAAT 3 2290 2286 6.89063 0 0: 0 0 CCAAT 4 3147 3143 6.89063 0 0: 0 0 CCAAT 5 3795 3791 6.89063 0 0: 0 0 CCAAT 6 4565 4561 6.89063 0 0: 0 0 CCAAT 7 5938 5934 6.89063 0 0: 0 0 CCAAT 8 6973 6969 6.89063 0 0: 0 0 CCAAT NM **** 40(2). CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.721 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1004 1014 1.72119 0 0: 0 0 TCTACCATACC 2 1370 1380 1.72119 0 0: 0 0 TGGCCCATCAC 3 1572 1582 1.72119 0 0: 0 0 TCATCCATTAC 4 2462 2472 1.72119 0 0: 0 0 TTCACCATTCC AI 00000 2 chain 1 sites find / exp.num. 1.721 interval 4 TD 1 3786 3776 1.72119 0 0: 0 0 TTCTCCATCTC NM **** 187(2.) CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.721 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1004 1014 1.72119 0 0: 0 0 TCTACCATACC 2 1370 1380 1.72119 0 0: 0 0 TGGCCCATCAC 3 1572 1582 1.72119 0 0: 0 0 TCATCCATTAC 4 2462 2472 1.72119 0 0: 0 0 TTCACCATTCC AI 00000 2 chain 1 sites find / exp.num. 1.721 interval 4 TD 1 3786 3776 1.72119 0 0: 0 0 TTCTCCATCTC NM **** 188(3). USF II FACTOR OF ADENOVIRUS SQ tgacgca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .431 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3848 3854 .43054 0 0: 0 0 TGACGCA NM **** 192(7). LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 6.890 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 909 914 6.88965 0 0: 0 0 TGAGGC AI 00000 2 chain 2 sites find / exp.num. 6.890 interval 11 TD 1 3733 3728 6.88965 0 0: 0 0 AGAGGC 2 4212 4207 6.88965 0 0: 0 0 TGAGGC NM **** 193(8). RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 3 sites find / exp.num. 1.721 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2869 2881 1.72070 7 0: 0 0 TGGgaaaatgCCA 2 3248 3260 1.72070 7 0: 0 0 TGGaataaaaCCA 3 6513 6525 1.72070 7 0: 0 0 TGGagaaaacCCA AI 00000 2 chain 3 sites find / exp.num. 1.721 interval 4 TD 1 2881 2869 1.72070 7 0: 0 0 TGGcattttcCCA 2 3260 3248 1.72070 7 0: 0 0 TGGttttattCCA 3 6525 6513 1.72070 7 0: 0 0 TGGgttttctCCA NM **** 202(22).Consensus sequence of the cAMP-CRP(cyclic AMP complex with it SQ aaagtgtgaca AI 00000 2 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6367 6357 .05715 0 1: 1 0 AAAGTGTGATA NM **** 207(28).Consensus sequence of several adenoviral promoters located at SQ gyrgytttc AI 00000 2 chain 2 sites find / exp.num. .215 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2301 2293 .21521 0 0: 0 0 GCAGTTTTC 2 2956 2948 .21521 0 0: 0 0 GCAGTTTTC NM **** 210(32).Optimal sequence for initiation of translation by eukaryotik SQ accatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .431 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 5243 5249 .43054 0 0: 0 0 ACCATGG NM **** 41(5). HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3201 3208 1.72192 0 0: 0 0 TTCCTGAA 2 3453 3460 1.72192 0 0: 0 0 TTCGAGAA 3 6497 6504 1.72192 0 0: 0 0 TTCAAGAA AI 00000 2 chain 3 sites find / exp.num. 1.722 interval 4 TD 1 3208 3201 1.72192 0 0: 0 0 TTCAGGAA 2 3460 3453 1.72192 0 0: 0 0 TTCTCGAA 3 6504 6497 1.72192 0 0: 0 0 TTCTTGAA NM **** 44(10). HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 222 228 1.72217 0 0: 0 0 TGCACTC 2 1608 1614 1.72217 0 0: 0 0 TGCACCC 3 3014 3020 1.72217 0 0: 0 0 TGCACCC 4 6808 6814 1.72217 0 0: 0 0 TGCACTC NM **** 46(12). SRE ELEMENT OF HSP70 pnas v84 n8 p2203 H21.30 SQ aagggaaaag CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .208 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5007 5016 .20846 0 1: 1 0 AAGGGAAAAT NM **** 48(33).Consensus sequence of the recognition sites for the glucocorti SQ tgttct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 5880 5885 1.72241 0 0: 0 0 TGTTCT AI 00000 2 chain 9 sites find / exp.num. 1.722 interval 4 TD 1 844 839 1.72241 0 0: 0 0 TGTTCT 2 1086 1081 1.72241 0 0: 0 0 TGTTCT 3 1442 1437 1.72241 0 0: 0 0 TGTTCT 4 1967 1962 1.72241 0 0: 0 0 TGTTCT 5 2237 2232 1.72241 0 0: 0 0 TGTTCT 6 3605 3600 1.72241 0 0: 0 0 TGTTCT 7 4405 4400 1.72241 0 0: 0 0 TGTTCT 8 4546 4541 1.72241 0 0: 0 0 TGTTCT 9 4933 4928 1.72241 0 0: 0 0 TGTTCT NM **** 53(34).Consensus of putative activator sequence of immediate early SQ taatgarat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .054 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5841 5849 .05380 0 0: 0 0 TAATGAAAT NM **** 228(29).Element of promotor of interferone GAMMA SQ aagtgtaat-gagtnnnct AI 00000 2 chain 1 sites find / exp.num. .175 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2351 2329 .00050 5 1: 0 1 AAGTGTAATagtatGAGTTTTAT NM **** 230(31).Consensus sequense of several binding sites of the glucocorti SQ gnnacaanntgtyct AI 00000 2 chain 1 sites find / exp.num. .108 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3241 3227 .10751 0 1: 1 0 GTTACGATGTGTCCT NM **** 235(4). CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 6.891 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 1794 1798 6.89063 0 0: 0 0 CCCAC 2 2062 2066 6.89063 0 0: 0 0 CCCAC 3 2730 2734 6.89063 0 0: 0 0 CCCAC 4 6529 6533 6.89063 0 0: 0 0 CCCAC NM **** 236(5). GG.Ar.CC BOX BINDING FACTOR SQ GGxxxxxxCC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .430 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3342 3351 .43036 0 0: 0 0 GGTTATTACC AI 00000 2 chain 1 sites find / exp.num. .430 interval 2 TD 1 3351 3342 .43036 0 0: 0 0 GGTAATAACC NM **** 242(11). ANTITROMBIN-III ENHANCER SPECIFIC FACTOR SQ gtGGxxxg AI 00000 2 chain 1 sites find / exp.num. .861 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 5156 5149 .86096 0 0: 0 0 GTGGAATG NM **** 252(21). RIBOSOMAL PROTEIN SPECIFIC MOTIF (JBC v263 n33 p17772) SQ cttccg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1182 1187 1.72241 0 0: 0 0 CTTCCG AI 00000 2 chain 1 sites find / exp.num. 1.722 interval 4 TD 1 2041 2036 1.72241 0 0: 0 0 CTTCCG NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 3.445 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 2830 2835 3.44482 0 0: 0 0 GATTTC 2 4140 4145 3.44482 0 0: 0 0 GATTTC 3 6342 6347 3.44482 0 0: 0 0 GATTTC AI 00000 2 chain 7 sites find / exp.num. 3.445 interval 7 TD 1 305 300 3.44482 0 0: 0 0 GATTTC 2 1210 1205 3.44482 0 0: 0 0 GATTTC 3 2004 1999 3.44482 0 0: 0 0 GATTTC 4 3320 3315 3.44482 0 0: 0 0 GATTTC 5 4799 4794 3.44482 0 0: 0 0 GATTTC 6 6487 6482 3.44482 0 0: 0 0 GATTTC 7 6891 6886 3.44482 0 0: 0 0 GATTTC NM **** 254(23). cycle cell 86 45 4 537 544 trt1 SQ GCGAAA CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.722 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2120 2125 1.72241 0 0: 0 0 GCGAAA 2 5792 5797 1.72241 0 0: 0 0 GCGAAA 3 6242 6247 1.72241 0 0: 0 0 GCGAAA NM **** 257(26).Regulated element of gene LSP of D.melanogaster EMBO J (1985) V 4 N P 3789 H SQ aaaytaaagctggt CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .483 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1261 1274 .48335 0 3: 3 0 AAATTACATCTGGA NM **** 258(27).Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .431 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3325 3331 .43054 0 0: 0 0 CATTCCT NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 6.891 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 1105 1109 6.89063 0 0: 0 0 GAAGA 2 1435 1439 6.89063 0 0: 0 0 GAAGA 3 1960 1964 6.89063 0 0: 0 0 GAAGA 4 2038 2042 6.89063 0 0: 0 0 GAAGA 5 3697 3701 6.89063 0 0: 0 0 GAAGA 6 3915 3919 6.89063 0 0: 0 0 GAAGA 7 5539 5543 6.89063 0 0: 0 0 GAAGA 8 6038 6042 6.89063 0 0: 0 0 GAAGA AI 00000 2 chain 4 sites find / exp.num. 6.891 interval 11 TD 1 168 164 6.89063 0 0: 0 0 GAAGA 2 574 570 6.89063 0 0: 0 0 GAAGA 3 5257 5253 6.89063 0 0: 0 0 GAAGA 4 6754 6750 6.89063 0 0: 0 0 GAAGA NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 23 sites find / exp.num. 6.890 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 127 132 6.88965 0 0: 0 0 AAATGA 2 682 687 6.88965 0 0: 0 0 AAGTGA 3 711 716 6.88965 0 0: 0 0 AAGTGA 4 740 745 6.88965 0 0: 0 0 AAGTGA 5 1201 1206 6.88965 0 0: 0 0 AAGGGA 6 1419 1424 6.88965 0 0: 0 0 AAATGA 7 2654 2659 6.88965 0 0: 0 0 AAATGA 8 2807 2812 6.88965 0 0: 0 0 AAATGA 9 3209 3214 6.88965 0 0: 0 0 AAAGGA 10 3408 3413 6.88965 0 0: 0 0 AAAGGA 11 3752 3757 6.88965 0 0: 0 0 AAAGGA 12 3826 3831 6.88965 0 0: 0 0 AAGGGA 13 4195 4200 6.88965 0 0: 0 0 AAGTGA 14 4300 4305 6.88965 0 0: 0 0 AAATGA 15 4367 4372 6.88965 0 0: 0 0 AAATGA 16 4754 4759 6.88965 0 0: 0 0 AAATGA 17 4949 4954 6.88965 0 0: 0 0 AAATGA 18 5007 5012 6.88965 0 0: 0 0 AAGGGA 19 5967 5972 6.88965 0 0: 0 0 AAATGA 20 6181 6186 6.88965 0 0: 0 0 AAGGGA 21 6338 6343 6.88965 0 0: 0 0 AAATGA 22 6504 6509 6.88965 0 0: 0 0 AAATGA 23 6713 6718 6.88965 0 0: 0 0 AAATGA AI 00000 2 chain 8 sites find / exp.num. 6.890 interval 11 TD 1 99 94 6.88965 0 0: 0 0 AAATGA 2 3567 3562 6.88965 0 0: 0 0 AAAGGA 3 3886 3881 6.88965 0 0: 0 0 AAATGA 4 4104 4099 6.88965 0 0: 0 0 AAATGA 5 4215 4210 6.88965 0 0: 0 0 AAATGA 6 5503 5498 6.88965 0 0: 0 0 AAAGGA 7 5911 5906 6.88965 0 0: 0 0 AAGGGA 8 6685 6680 6.88965 0 0: 0 0 AAATGA NM **** 271(41).Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 6.891 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 3851 3855 6.89063 0 0: 0 0 CGCAC 2 4913 4917 6.89063 0 0: 0 0 CGCAC 3 5167 5171 6.89063 0 0: 0 0 CGCAC AI 00000 2 chain 1 sites find / exp.num. 6.891 interval 11 TD 1 1025 1021 6.89063 0 0: 0 0 CGCAC NM **** 276(46).Sequence frequently found in the promoter region of histone H SQ tgagggtnrtttgtcacagttt AI 00000 2 chain 1 sites find / exp.num. .015 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 6494 6473 .01478 0 5: 5 0 TGTGGCTGATTTCTTTCAGTTT