ID DVULYSS DE D.virilis Ulysses retrotransposon NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 580 585 2.59961 0 0: 0 0 TATAAA 2 1038 1043 2.59961 0 0: 0 0 TATAAA 3 4462 4467 2.59961 0 0: 0 0 TATAAA 4 9097 9102 2.59961 0 0: 0 0 TATAAA 5 9555 9560 2.59961 0 0: 0 0 TATAAA 6 9657 9662 2.59961 0 0: 0 0 TATAAA AI 00000 2 chain 9 sites find / exp.num. 2.600 interval 5 TD 1 581 576 2.59961 0 0: 0 0 TATAAA 2 1041 1036 2.59961 0 0: 0 0 TATAAA 3 1221 1216 2.59961 0 0: 0 0 TATAAA 4 1880 1875 2.59961 0 0: 0 0 TATAAA 5 3327 3322 2.59961 0 0: 0 0 TATAAA 6 9098 9093 2.59961 0 0: 0 0 TATAAA 7 9558 9553 2.59961 0 0: 0 0 TATAAA 8 9739 9734 2.59961 0 0: 0 0 TATAAA 9 10398 10393 2.59961 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 14 sites find / exp.num.10.397 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 37 43 10.39746 0 0: 0 0 CTCAGTT 2 266 272 10.39746 0 0: 0 0 TTCATTT 3 1981 1987 10.39746 0 0: 0 0 TTCATTT 4 2539 2545 10.39746 0 0: 0 0 CTCATTT 5 3065 3071 10.39746 0 0: 0 0 GTCAGTC 6 3963 3969 10.39746 0 0: 0 0 CTCAGTC 7 5279 5285 10.39746 0 0: 0 0 CTCAGTC 8 5283 5289 10.39746 0 0: 0 0 GTCAGTC 9 5668 5674 10.39746 0 0: 0 0 GTCAGTT 10 6018 6024 10.39746 0 0: 0 0 CTCATTT 11 6369 6375 10.39746 0 0: 0 0 TTCATTC 12 8554 8560 10.39746 0 0: 0 0 CTCAGTT 13 8783 8789 10.39746 0 0: 0 0 TTCATTT 14 10499 10505 10.39746 0 0: 0 0 TTCATTT AI 00000 2 chain 11 sites find / exp.num.10.397 interval 16 TD 1 1767 1761 10.39746 0 0: 0 0 CTCATTT 2 2218 2212 10.39746 0 0: 0 0 TTCATTT 3 2930 2924 10.39746 0 0: 0 0 CTCATTT 4 3079 3073 10.39746 0 0: 0 0 GTCAGTT 5 3087 3081 10.39746 0 0: 0 0 CTCAGTT 6 3423 3417 10.39746 0 0: 0 0 ATCAGTC 7 3736 3730 10.39746 0 0: 0 0 ATCATTT 8 5257 5251 10.39746 0 0: 0 0 TTCATTT 9 6539 6533 10.39746 0 0: 0 0 ATCAGTC 10 7039 7033 10.39746 0 0: 0 0 GTCAGTT 11 10285 10279 10.39746 0 0: 0 0 CTCATTT NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 17 sites find / exp.num.10.399 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 1103 1107 10.39941 0 0: 0 0 GGAAA 2 2227 2231 10.39941 0 0: 0 0 GGAAA 3 3545 3549 10.39941 0 0: 0 0 GGAAA 4 3728 3732 10.39941 0 0: 0 0 GGAAA 5 4781 4785 10.39941 0 0: 0 0 GGAAA 6 4804 4808 10.39941 0 0: 0 0 GGAAA 7 4846 4850 10.39941 0 0: 0 0 GGAAA 8 4906 4910 10.39941 0 0: 0 0 GGAAA 9 4947 4951 10.39941 0 0: 0 0 GGAAA 10 5636 5640 10.39941 0 0: 0 0 GGAAA 11 5675 5679 10.39941 0 0: 0 0 GGAAA 12 5722 5726 10.39941 0 0: 0 0 GGAAA 13 5941 5945 10.39941 0 0: 0 0 GGAAA 14 6731 6735 10.39941 0 0: 0 0 GGAAA 15 7306 7310 10.39941 0 0: 0 0 GGAAA 16 7378 7382 10.39941 0 0: 0 0 GGAAA 17 9620 9624 10.39941 0 0: 0 0 GGAAA AI 00000 2 chain 7 sites find / exp.num.10.399 interval 16 TD 1 488 484 10.39941 0 0: 0 0 GGAAA 2 3486 3482 10.39941 0 0: 0 0 GGAAA 3 4004 4000 10.39941 0 0: 0 0 GGAAA 4 4208 4204 10.39941 0 0: 0 0 GGAAA 5 6259 6255 10.39941 0 0: 0 0 GGAAA 6 7135 7131 10.39941 0 0: 0 0 GGAAA 7 9005 9001 10.39941 0 0: 0 0 GGAAA NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 536 541 2.59961 0 0: 0 0 AATAAA 2 570 575 2.59961 0 0: 0 0 AATAAA 3 615 620 2.59961 0 0: 0 0 AATAAA 4 1138 1143 2.59961 0 0: 0 0 AATAAA 5 2198 2203 2.59961 0 0: 0 0 AATAAA 6 9053 9058 2.59961 0 0: 0 0 AATAAA 7 9087 9092 2.59961 0 0: 0 0 AATAAA 8 9132 9137 2.59961 0 0: 0 0 AATAAA AI 00000 2 chain 7 sites find / exp.num. 2.600 interval 5 TD 1 2521 2516 2.59961 0 0: 0 0 AATAAA 2 3249 3244 2.59961 0 0: 0 0 AATAAA 3 3259 3254 2.59961 0 0: 0 0 AATAAA 4 3287 3282 2.59961 0 0: 0 0 AATAAA 5 3291 3286 2.59961 0 0: 0 0 AATAAA 6 3295 3290 2.59961 0 0: 0 0 AATAAA 7 3303 3298 2.59961 0 0: 0 0 AATAAA NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num.10.399 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 2271 2275 10.39941 0 0: 0 0 TATGT 2 7371 7375 10.39941 0 0: 0 0 TATGT AI 00000 2 chain 13 sites find / exp.num.10.399 interval 16 TD 1 514 510 10.39941 0 0: 0 0 TATGT 2 1058 1054 10.39941 0 0: 0 0 TATGT 3 1062 1058 10.39941 0 0: 0 0 TATGT 4 1192 1188 10.39941 0 0: 0 0 TATGT 5 1289 1285 10.39941 0 0: 0 0 TATGT 6 1310 1306 10.39941 0 0: 0 0 TATGT 7 8302 8298 10.39941 0 0: 0 0 TATGT 8 9031 9027 10.39941 0 0: 0 0 TATGT 9 9575 9571 10.39941 0 0: 0 0 TATGT 10 9579 9575 10.39941 0 0: 0 0 TATGT 11 9710 9706 10.39941 0 0: 0 0 TATGT 12 9807 9803 10.39941 0 0: 0 0 TATGT 13 9828 9824 10.39941 0 0: 0 0 TATGT NM **** 10.(18) ORI HUM SQ taaatttagt CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .315 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1017 1026 .31468 0 1: 1 0 TAAATTTGGT 2 9534 9543 .31468 0 1: 1 0 TAAATTTGGT AI 00000 2 chain 2 sites find / exp.num. .315 interval 1 TD 1 579 570 .31468 0 1: 1 0 TAAATTTATT 2 9096 9087 .31468 0 1: 1 0 TAAATTTATT NM **** 12.(15) HSV ORI SQ atatatatat CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .315 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4495 4504 .31468 0 1: 1 0 ATATATTTAT AI 00000 2 chain 1 sites find / exp.num. .315 interval 1 TD 1 4504 4495 .31468 0 1: 1 0 ATAAATATAT NM **** 13.(19) ARS Y XE DM SQ xtttatrtttx AI 00000 2 chain 1 sites find / exp.num. .020 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 9663 9653 .02030 0 0: 0 0 TTTTATATTTT NM **** 14.(24) ARS yeast, xenopus SQ xttttatrtttx AI 00000 2 chain 6 sites find / exp.num. .157 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 619 608 .15731 0 1: 1 0 TTATTATATTTT 2 1147 1136 .15731 0 1: 1 0 TTTTTTTATTTT 3 1164 1153 .15731 0 1: 1 0 ATTTTAGATTTT 4 9136 9125 .15731 0 1: 1 0 TTATTATATTTT 5 9664 9653 .00507 0 0: 0 0 TTTTTATATTTT 6 9682 9671 .15731 0 1: 1 0 ATTTTAGATTTT NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa AI 00000 2 chain 2 sites find / exp.num. .020 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 3291 3282 .02030 0 0: 0 0 AATAAATAAA 2 3295 3286 .02030 0 0: 0 0 AATAAATAAA NM **** 16.(23) SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt AI 00000 2 chain 38 sites find / exp.num. .081 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 624 615 .08121 0 0: 0 0 TTTTTTTATT 2 1147 1138 .08121 0 0: 0 0 TTTTTTTATT 3 1150 1141 .08121 0 0: 0 0 TTTTTTTTTT 4 1151 1142 .08121 0 0: 0 0 TTTTTTTTTT 5 1152 1143 .08121 0 0: 0 0 TTTTTTTTTT 6 1153 1144 .08121 0 0: 0 0 TTTTTTTTTT 7 1154 1145 .08121 0 0: 0 0 TTTTTTTTTT 8 1155 1146 .08121 0 0: 0 0 TTTTTTTTTT 9 1156 1147 .08121 0 0: 0 0 TTTTTTTTTT 10 1460 1451 .08121 0 0: 0 0 TTTTTTTTTT 11 1461 1452 .08121 0 0: 0 0 TTTTTTTTTT 12 1462 1453 .08121 0 0: 0 0 TTTTTTTTTT 13 1463 1454 .08121 0 0: 0 0 TTTTTTTTTT 14 1464 1455 .08121 0 0: 0 0 TTTTTTTTTT 15 1465 1456 .08121 0 0: 0 0 TTTTTTTTTT 16 1466 1457 .08121 0 0: 0 0 TTTTTTTTTT 17 1467 1458 .08121 0 0: 0 0 TTTTTTTTTT 18 1468 1459 .08121 0 0: 0 0 TTTTTTTTTT 19 8386 8377 .08121 0 0: 0 0 TTTTTTTTTT 20 8387 8378 .08121 0 0: 0 0 TTTTTTTTTT 21 8388 8379 .08121 0 0: 0 0 TTTTTTTTTT 22 8389 8380 .08121 0 0: 0 0 TTTTTTTTTT 23 9141 9132 .08121 0 0: 0 0 TTTTTTTATT 24 9669 9660 .08121 0 0: 0 0 TTTTTTTTTT 25 9670 9661 .08121 0 0: 0 0 TTTTTTTTTT 26 9671 9662 .08121 0 0: 0 0 TTTTTTTTTT 27 9672 9663 .08121 0 0: 0 0 TTTTTTTTTT 28 9673 9664 .08121 0 0: 0 0 TTTTTTTTTT 29 9674 9665 .08121 0 0: 0 0 TTTTTTTTTT 30 9978 9969 .08121 0 0: 0 0 TTTTTTTTTT 31 9979 9970 .08121 0 0: 0 0 TTTTTTTTTT 32 9980 9971 .08121 0 0: 0 0 TTTTTTTTTT 33 9981 9972 .08121 0 0: 0 0 TTTTTTTTTT 34 9982 9973 .08121 0 0: 0 0 TTTTTTTTTT 35 9983 9974 .08121 0 0: 0 0 TTTTTTTTTT 36 9984 9975 .08121 0 0: 0 0 TTTTTTTTTT 37 9985 9976 .08121 0 0: 0 0 TTTTTTTTTT 38 9986 9977 .08121 0 0: 0 0 TTTTTTTTTT NM **** 17(30). initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.299 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2653 2661 1.29944 0 0: 0 0 CAAGAATGG 2 5708 5716 1.29944 0 0: 0 0 GAAGGATGG AI 00000 2 chain 6 sites find / exp.num. 1.299 interval 3 TD 1 923 915 1.29944 0 0: 0 0 GAACAATGG 2 1343 1335 1.29944 0 0: 0 0 GAACAATGG 3 2438 2430 1.29944 0 0: 0 0 GAACGATGG 4 6665 6657 1.29944 0 0: 0 0 GAAGAATGG 5 9440 9432 1.29944 0 0: 0 0 GAACAATGG 6 9861 9853 1.29944 0 0: 0 0 GAACAATGG NM **** 18(32).optimal sequence for initiation of translation by eukaryotik SQ accatgg AI 00000 2 chain 1 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2696 2690 .64984 0 0: 0 0 ACCATGG NM **** 55(3). ANIMAL POLIMERASE II SQ ggycaatct-tataxax AI 00000 2 chain 1 sites find / exp.num. .397 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2663 2610 .39725 38 2: 1 1 GGCCATTCTtgggatatgctgtgtgacagatgcggcgcaggctcggcTCTATAT NM **** 59(10). EXON-INTRON JUNCTION SQ mAGGtragt AI 00000 2 chain 2 sites find / exp.num. .162 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5735 5727 .16243 0 0: 0 0 CAGGTGAGT 2 7730 7722 .16243 0 0: 0 0 CAGGTGAGT NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 6 sites find / exp.num. 2.599 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 996 987 2.59863 0 0: 0 0 CCTTTTCAGG 2 3522 3513 2.59863 0 0: 0 0 CCTTTACAGG 3 4168 4159 2.59863 0 0: 0 0 CCTCTGCAGG 4 5726 5717 2.59863 0 0: 0 0 TTTCCCTAGG 5 5919 5910 2.59863 0 0: 0 0 TCTTCCCAGG 6 9513 9504 2.59863 0 0: 0 0 CCTTTTCAGG NM **** 61(12). lar+3' SQ YTaAT-yyyyaG CC distance between two blocks of site: min = 16 max = 36 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 2 sites find / exp.num. 1.701 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1198 1242 1.70103 34 0: 0 0 CTAATttgaatttacgcatttatatcgccccttaccaccCCCCAG 2 9716 9760 1.70103 34 0: 0 0 CTAATttgaatttacgcatttatatcgccccttaccaccCCCCAG AI 00000 2 chain 1 sites find / exp.num. 1.701 interval 4 TD 1 5949 5911 1.70103 28 0: 0 0 TTAATttcctggcgtctaagcaaaacctgttctTCCCAG NM **** 69(28).ARS of human SQ tattyytaaatttagtxt CC max mismatch : 4 AI 00000 1 chain 3 sites find / exp.num. .206 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1011 1028 .20639 0 4: 4 0 TATCGTTAAATTTGGTTA 2 3288 3305 .20639 0 4: 4 0 TATTTATTAATTTATTAG 3 9528 9545 .20639 0 4: 4 0 TATCGTTAAATTTGGTTA AI 00000 2 chain 2 sites find / exp.num. .206 interval 1 TD 1 1166 1149 .20639 0 4: 4 0 TAATTTTAGATTTTTTTT 2 9684 9667 .20639 0 4: 4 0 TAATTTTAGATTTTTTTT NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num.10.399 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 325 329 10.39941 0 0: 0 0 GCCTC 2 1363 1367 10.39941 0 0: 0 0 GCCTC 3 1374 1378 10.39941 0 0: 0 0 GCCTC 4 5277 5281 10.39941 0 0: 0 0 GCCTC 5 7748 7752 10.39941 0 0: 0 0 GCCTC 6 8842 8846 10.39941 0 0: 0 0 GCCTC 7 9881 9885 10.39941 0 0: 0 0 GCCTC 8 9892 9896 10.39941 0 0: 0 0 GCCTC AI 00000 2 chain 15 sites find / exp.num.10.399 interval 16 TD 1 727 723 10.39941 0 0: 0 0 GCCTC 2 2940 2936 10.39941 0 0: 0 0 GCCTC 3 4047 4043 10.39941 0 0: 0 0 GCCTC 4 4169 4165 10.39941 0 0: 0 0 GCCTC 5 4562 4558 10.39941 0 0: 0 0 GCCTC 6 4625 4621 10.39941 0 0: 0 0 GCCTC 7 4692 4688 10.39941 0 0: 0 0 GCCTC 8 5566 5562 10.39941 0 0: 0 0 GCCTC 9 5910 5906 10.39941 0 0: 0 0 GCCTC 10 6114 6110 10.39941 0 0: 0 0 GCCTC 11 6175 6171 10.39941 0 0: 0 0 GCCTC 12 6583 6579 10.39941 0 0: 0 0 GCCTC 13 7301 7297 10.39941 0 0: 0 0 GCCTC 14 8139 8135 10.39941 0 0: 0 0 GCCTC 15 9244 9240 10.39941 0 0: 0 0 GCCTC NM **** 72(33).consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .020 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 9653 9663 .02030 0 0: 0 0 AAAATATAAAA NM **** 76(4a).sequence common for transcription initiation sites of rRNA gen SQ trctgacacgctgtcctyt AI 00000 2 chain 1 sites find / exp.num. .334 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 8026 8008 .03915 0 4: 4 0 TACAGCCAGTCTGTCCTTT NM **** 80(11a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 3329 3334 2.59961 0 0: 0 0 GGGTTG 2 5259 5264 2.59961 0 0: 0 0 GGGTTG NM **** 82(13a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 7435 7440 2.59961 0 0: 0 0 TTGGGG 2 7488 7493 2.59961 0 0: 0 0 TTGGGG AI 00000 2 chain 1 sites find / exp.num. 2.600 interval 5 TD 1 3174 3169 2.59961 0 0: 0 0 TTGGGG NM **** 84(15a).one of two suggested consensus sequences for RNA-polymerase I SQ ggttcganncc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .041 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 937 947 .04060 0 0: 0 0 GGTTCGAGCCC 2 9454 9464 .04060 0 0: 0 0 GGTTCGAGCCC NM **** 91(22a).consensus sequence near the 5'-ends of the adenovirus 2 genes SQ gtggynnrgtgg AI 00000 2 chain 1 sites find / exp.num. .041 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 3896 3885 .04060 0 0: 0 0 GTGGCACGGTGG NM **** 94(25a).Consensus sequence of the RNA polymerase III of genes of tRNA SQ gtggynnrgtgg-ggttcgaancc CC distance between two blocks of site: min = 31 max = 74 CC max mismatch in 1-st block: 2, in 2-nd block: 2 AI 00000 1 chain 1 sites find / exp.num. .242 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 3396 3474 .24216 56 4: 2 2 GTGTCTGATTGGgcttctgacgactgatggggcgtcgctctgccaccgccgagcccagctggagggctGGTGCGAACGC NM **** 95(26a).Consensus sequence of the RNA polymerase III of genes of tRNA SQ rrynnarygg-gxtcrancc AI 00000 2 chain 2 sites find / exp.num. .291 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 919 845 .29141 56 1: 0 1 AATGGAACGGactcactacggtggatgtgggaccggggtctacgcctgtggaccgacttcttcgttGTTGGAGCC 2 9436 9362 .29141 56 1: 0 1 AATGGAACGGactcactacggtggatgtgggaccggggtctacgcctgtggaccgacttcttcgttGTTGGAGCC NM **** 98(29a).sequence within the promoter of the human mitochondrial gene SQ cccacacccctgtc CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .424 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2253 2266 .42372 0 3: 3 0 CCCACACCGCTGAA NM **** 99(31a).putative regulatory sequence(promoter element) present in SQ gggnggrr CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.599 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 3921 3928 2.59912 0 0: 0 0 GGGCGGAG 2 5197 5204 2.59912 0 0: 0 0 GGGAGGAG AI 00000 2 chain 1 sites find / exp.num. 2.599 interval 5 TD 1 8359 8352 2.59912 0 0: 0 0 GGGGGGGA NM **** 100(32a).consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .325 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 9657 9664 .32489 0 0: 0 0 TATAAAAA AI 00000 2 chain 3 sites find / exp.num. .325 interval 1 TD 1 1041 1034 .32489 0 0: 0 0 TATAAATA 2 3327 3320 .32489 0 0: 0 0 TATAAAAA 3 9558 9551 .32489 0 0: 0 0 TATAAATA NM **** 101(33a)."Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 2.599 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 578 584 2.59937 0 0: 0 0 TATATAA 2 580 586 2.59937 0 0: 0 0 TATAAAT 3 1038 1044 2.59937 0 0: 0 0 TATAAAA 4 7474 7480 2.59937 0 0: 0 0 TATATAT 5 9095 9101 2.59937 0 0: 0 0 TATATAA 6 9097 9103 2.59937 0 0: 0 0 TATAAAT 7 9555 9561 2.59937 0 0: 0 0 TATAAAA 8 9657 9663 2.59937 0 0: 0 0 TATAAAA AI 00000 2 chain 11 sites find / exp.num. 2.599 interval 5 TD 1 581 575 2.59937 0 0: 0 0 TATAAAT 2 583 577 2.59937 0 0: 0 0 TATATAA 3 1041 1035 2.59937 0 0: 0 0 TATAAAT 4 1221 1215 2.59937 0 0: 0 0 TATAAAT 5 1880 1874 2.59937 0 0: 0 0 TATAAAT 6 3327 3321 2.59937 0 0: 0 0 TATAAAA 7 9098 9092 2.59937 0 0: 0 0 TATAAAT 8 9100 9094 2.59937 0 0: 0 0 TATATAA 9 9558 9552 2.59937 0 0: 0 0 TATAAAT 10 9739 9733 2.59937 0 0: 0 0 TATAAAT 11 10398 10392 2.59937 0 0: 0 0 TATAAAT NM **** 103(36a).consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 1556 1561 2.59961 0 0: 0 0 AAGTTA 2 6606 6611 2.59961 0 0: 0 0 AAGTTA 3 10074 10079 2.59961 0 0: 0 0 AAGTTA NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num.10.399 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 2451 2455 10.39941 0 0: 0 0 CCGCA 2 2629 2633 10.39941 0 0: 0 0 CCGCA 3 2976 2980 10.39941 0 0: 0 0 CCGCA 4 4652 4656 10.39941 0 0: 0 0 CCGCA 5 5150 5154 10.39941 0 0: 0 0 CCGCA 6 6347 6351 10.39941 0 0: 0 0 CCGCA 7 6977 6981 10.39941 0 0: 0 0 CCGCA 8 7778 7782 10.39941 0 0: 0 0 CCGCA 9 8058 8062 10.39941 0 0: 0 0 CCGCA AI 00000 2 chain 13 sites find / exp.num.10.399 interval 16 TD 1 1333 1329 10.39941 0 0: 0 0 CCGCA 2 1398 1394 10.39941 0 0: 0 0 CCGCA 3 1980 1976 10.39941 0 0: 0 0 CCGCA 4 2051 2047 10.39941 0 0: 0 0 CCGCA 5 2058 2054 10.39941 0 0: 0 0 CCGCA 6 4258 4254 10.39941 0 0: 0 0 CCGCA 7 4291 4287 10.39941 0 0: 0 0 CCGCA 8 7875 7871 10.39941 0 0: 0 0 CCGCA 9 9851 9847 10.39941 0 0: 0 0 CCGCA 10 9916 9912 10.39941 0 0: 0 0 CCGCA 11 10498 10494 10.39941 0 0: 0 0 CCGCA 12 10569 10565 10.39941 0 0: 0 0 CCGCA 13 10576 10572 10.39941 0 0: 0 0 CCGCA NM **** 105(40a).sequence frequently found in the promoter region of histone SQ gtcccccc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .162 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 8351 8358 .16245 0 0: 0 0 GTCCCCCC NM **** 106(41a).sequence frequently found in the promoter region of histone SQ ccccacacccctgt CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .034 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2252 2265 .03417 0 2: 2 0 CCCCACACCGCTGA NM **** 110(3b).2nd binding-region of big T-antigene in begining of SQ tggagaaaaagaagagaggcttccacaggcaa AI 00000 2 chain 1 sites find / exp.num. .085 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3173 3142 .08481 0 12:12 0 TGGGGAGAGACGACAAATCCTAACACAGGCTA NM **** 112(5b).2nd binding-region of big T-antigene in begining of SQ gtagtgaggaggttttttggaggcctaggct AI 00000 2 chain 1 sites find / exp.num. .214 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3593 3563 .21439 0 12:12 0 GGGAACTCCAGGTTCCGTGGAGGTCTAGGCT NM **** 113(6b).Sequence located at the 3'-ends of yeast genes,presumably SQ tttttata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .162 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3320 3327 .16245 0 0: 0 0 TTTTTATA AI 00000 2 chain 1 sites find / exp.num. .162 interval 1 TD 1 9664 9657 .16245 0 0: 0 0 TTTTTATA NM **** 114(7b).Termination of transcription of RNA polymerase I of mouse SQ aggtcgaccagxxntccg AI 00000 2 chain 1 sites find / exp.num. .375 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 6235 6218 .37489 0 4: 4 0 AAGTCGTCCAGGTATACG NM **** 121(16b).Consensus of a presumed polyadenylation signal in Trypanosom SQ aaaattyt CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. .325 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 132 139 .32489 0 0: 0 0 AAAATTTT 2 477 484 .32489 0 0: 0 0 AAAATTTT 3 3202 3209 .32489 0 0: 0 0 AAAATTTT 4 8649 8656 .32489 0 0: 0 0 AAAATTTT 5 8994 9001 .32489 0 0: 0 0 AAAATTTT AI 00000 2 chain 6 sites find / exp.num. .325 interval 1 TD 1 139 132 .32489 0 0: 0 0 AAAATTTT 2 484 477 .32489 0 0: 0 0 AAAATTTT 3 3209 3202 .32489 0 0: 0 0 AAAATTTT 4 5083 5076 .32489 0 0: 0 0 AAAATTCT 5 8656 8649 .32489 0 0: 0 0 AAAATTTT 6 9001 8994 .32489 0 0: 0 0 AAAATTTT NM **** 125(23b).Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 5.199 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 2632 2638 5.19873 0 0: 0 0 CATCTGT 2 3679 3685 5.19873 0 0: 0 0 CATCTGG 3 4172 4178 5.19873 0 0: 0 0 TATCAGT 4 8109 8115 5.19873 0 0: 0 0 CATCTGG AI 00000 2 chain 2 sites find / exp.num. 5.199 interval 9 TD 1 3424 3418 5.19873 0 0: 0 0 CATCAGT 2 6540 6534 5.19873 0 0: 0 0 CATCAGT NM **** 126(24b)."Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 2.599 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 6138 6144 2.59937 0 0: 0 0 CCATTCG 2 6370 6376 2.59937 0 0: 0 0 TCATTCA 3 7655 7661 2.59937 0 0: 0 0 CCATTCG AI 00000 2 chain 1 sites find / exp.num. 2.599 interval 5 TD 1 7940 7934 2.59937 0 0: 0 0 CCATTCA NM **** 127(25b).RNA processing in mitochondria NAR 13,31(Gnomic) SQ attcatac CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .162 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1048 1055 .16245 0 0: 0 0 ATTCATAC 2 9565 9572 .16245 0 0: 0 0 ATTCATAC NM **** 130(28b).Site of splising of vertebrates 5'-end: PNAS (1984) V 81 N 2 SQ agguaagu AI 00000 2 chain 2 sites find / exp.num. .162 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1199 1192 .16245 0 0: 0 0 AGGTAAGT 2 9717 9710 .16245 0 0: 0 0 AGGTAAGT NM **** 131(29b).Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg AI 00000 2 chain 5 sites find / exp.num. 1.299 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 996 987 1.29932 0 0: 0 0 CCTTTTCAGG 2 3522 3513 1.29932 0 0: 0 0 CCTTTACAGG 3 4168 4159 1.29932 0 0: 0 0 CCTCTGCAGG 4 5919 5910 1.29932 0 0: 0 0 TCTTCCCAGG 5 9513 9504 1.29932 0 0: 0 0 CCTTTTCAGG NM **** 132(33b).Brunch : PNAS (1984) V 81 N 23 P 7417 H SQ uacuaac AI 00000 2 chain 2 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1951 1945 .64984 0 0: 0 0 TACTAAC 2 10469 10463 .64984 0 0: 0 0 TACTAAC NM **** 134(35b).Site of splising of plants 3'-end: NAR (1986) V 14 N 24 P 95 SQ tttkttkkkktgcagg AI 00000 2 chain 3 sites find / exp.num. .353 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1146 1131 .02147 0 1: 1 0 TTTTTTATTTTACAGG 2 8387 8372 .35317 0 2: 2 0 TTTTTTTTTTTGCTGA 3 9663 9648 .35317 0 2: 2 0 TTTTATATTTTACAGG NM **** 135(37b).Conservative blocks in selfsplising introns 1 group A: SQ augcuggaaa CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .315 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4725 4734 .31468 0 1: 1 0 ATGCTGGAAC NM **** 19(5). SECOND MOTIF OF Ad5 E1a SQ zgcgxaa CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 2.599 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 2410 2416 2.59937 0 0: 0 0 GGCGAAA 2 3978 3984 2.59937 0 0: 0 0 GGCGTAA 3 4489 4495 2.59937 0 0: 0 0 GGCGAAA AI 00000 2 chain 2 sites find / exp.num. 2.599 interval 5 TD 1 1074 1068 2.59937 0 0: 0 0 GGCGTAA 2 9591 9585 2.59937 0 0: 0 0 GGCGTAA NM **** 21(12). Mol.Cel.Biol. v62 n8 p1925 E2-PROTEINE OF PAPILLOMPAVIRUS SQ acc-ggt CC distance between two blocks of site: min = 6 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 2.598 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 7803 7814 2.59814 6 0: 0 0 ACCtacctgGGT AI 00000 2 chain 1 sites find / exp.num. 2.598 interval 5 TD 1 7814 7803 2.59814 6 0: 0 0 ACCcaggtaGGT NM **** 22(18). PNAS v84 n5 p1272 H21.3.5 PROTEIN BINDING SITE IN c-FOS ENHAN SQ cccgtc AI 00000 2 chain 1 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 5199 5194 2.59961 0 0: 0 0 CCCGTC NM **** 24(23). E MOTIF Ig ENHANCER SQ cAgnTGGc AI 00000 2 chain 1 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3684 3677 .64978 0 0: 0 0 CAGATGGC NM **** 25(25). LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 1589 1594 2.59961 0 0: 0 0 GAACAG 2 3835 3840 2.59961 0 0: 0 0 GAACAG 3 5918 5923 2.59961 0 0: 0 0 GAACAG AI 00000 2 chain 4 sites find / exp.num. 2.600 interval 5 TD 1 1437 1432 2.59961 0 0: 0 0 GAACAG 2 3365 3360 2.59961 0 0: 0 0 GAACAG 3 6347 6342 2.59961 0 0: 0 0 GAACAG 4 9955 9950 2.59961 0 0: 0 0 GAACAG NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num.10.399 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 2623 2627 10.39941 0 0: 0 0 CCTGC 2 4159 4163 10.39941 0 0: 0 0 CCTGC 3 4195 4199 10.39941 0 0: 0 0 CCTGC 4 4210 4214 10.39941 0 0: 0 0 CCTGC 5 5465 5469 10.39941 0 0: 0 0 CCTGC 6 5732 5736 10.39941 0 0: 0 0 CCTGC 7 7727 7731 10.39941 0 0: 0 0 CCTGC 8 8050 8054 10.39941 0 0: 0 0 CCTGC AI 00000 2 chain 8 sites find / exp.num.10.399 interval 16 TD 1 2943 2939 10.39941 0 0: 0 0 CCTGC 2 4346 4342 10.39941 0 0: 0 0 CCTGC 3 4915 4911 10.39941 0 0: 0 0 CCTGC 4 5162 5158 10.39941 0 0: 0 0 CCTGC 5 6084 6080 10.39941 0 0: 0 0 CCTGC 6 7154 7150 10.39941 0 0: 0 0 CCTGC 7 7252 7248 10.39941 0 0: 0 0 CCTGC 8 7428 7424 10.39941 0 0: 0 0 CCTGC NM **** 28(34). INTERFERONE BETA ENHANCER (J.Mol Biol v204 n2 p221) SQ aaxanngaaaggr CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .304 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 621 633 .30444 0 1: 1 0 AAAATTGAAAGAG 2 5249 5261 .30444 0 1: 1 0 CAAAATGAAAGGG 3 9138 9150 .30444 0 1: 1 0 AAAATTGAAAGAG NM **** 29(42).Enchanser region of virus PV SQ gctgtgqttttgca CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .062 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6699 6712 .06199 0 2: 2 0 GCTGTGTTGTTCCA NM **** 30(43).Enchanser region of virus MSV SQ tctgtggtaaag CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .400 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2889 2900 .40025 0 2: 2 0 TCTGTGTTAACG 2 5568 5579 .40025 0 2: 2 0 TCTGAGGTAACG NM **** 33(57).Conservative elements of Ig enchanser (B,E1,E2,E3) SQ gccatctggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .315 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3677 3686 .01015 0 0: 0 0 GCCATCTGGC NM **** 34(60).potential core sequence of enhancers of various human viruses SQ cxxxccac CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.300 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1228 1235 1.29956 0 0: 0 0 CTTACCAC 2 3878 3885 1.29956 0 0: 0 0 CATTCCAC 3 9746 9753 1.29956 0 0: 0 0 CTTACCAC AI 00000 2 chain 1 sites find / exp.num. 1.300 interval 3 TD 1 4809 4802 1.29956 0 0: 0 0 CTTTCCAC NM **** 35(63).enhancer core SV40 SQ tGTGgxxx CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.300 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1927 1934 1.29956 0 0: 0 0 TGTGGATT 2 4801 4808 1.29956 0 0: 0 0 TGTGGAAA 3 10445 10452 1.29956 0 0: 0 0 TGTGGATT NM **** 145(8). SV40 ENHANCER CORE SQ tgtggxxxg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .325 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4801 4809 .32486 0 0: 0 0 TGTGGAAAG NM **** 155(21). TC ELEMENT SV40 SQ tccccag AI 00000 2 chain 2 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1711 1705 .64984 0 0: 0 0 TCCCCAG 2 10229 10223 .64984 0 0: 0 0 TCCCCAG NM **** 158(26). LVb MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ caggata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4977 4983 .64984 0 0: 0 0 CAGGATA NM **** 162(31). lysozyme silencer 2 (EMBO J v6 n8 p2298) SQ antcTcctcc AI 00000 2 chain 1 sites find / exp.num. .041 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 5207 5198 .04060 0 0: 0 0 ACTCTCCTCC NM **** 163(32). LYSOZYME SILENCER 3 (EMBO J v6 n8 p2298) SQ ancaaTgGct CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .041 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 517 526 .04060 0 0: 0 0 ACCAATGGCT 2 9034 9043 .04060 0 0: 0 0 ACCAATGGCT NM **** 166(37).Consensus enchanser region of virus SV40 SQ rrtgtggxxx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .325 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4799 4808 .32483 0 0: 0 0 GGTGTGGAAA NM **** 167(38).Enchanser region of virus SV40 SQ gggtgtggaaagtccca CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .132 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4798 4814 .13152 0 4: 4 0 AGGTGTGGAAAGCCGGA NM **** 178(53).Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ gtcatgtggc AI 00000 2 chain 1 sites find / exp.num. .315 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6139 6130 .31468 0 1: 1 0 GGCATGTGGC NM **** 179(54).Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ cccaggtggt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .315 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6930 6939 .31468 0 1: 1 0 GCCAGGTGGT AI 00000 2 chain 1 sites find / exp.num. .315 interval 1 TD 1 6367 6358 .31468 0 1: 1 0 CCCAGGTAGT NM **** 182(58).Conservative elements of Ig enchanser (B,E1,E2,E3) SQ ggcaggtggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .315 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2938 2947 .31468 0 1: 1 0 GGCAGGTGAC AI 00000 2 chain 1 sites find / exp.num. .315 interval 1 TD 1 6139 6130 .31468 0 1: 1 0 GGCATGTGGC NM **** 183(59).Conservative elements of Ig enchanser (B,E1,E2,E3) SQ cccatgtggt AI 00000 2 chain 1 sites find / exp.num. .315 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4407 4398 .31468 0 1: 1 0 CGCATGTGGT NM **** 184(61).Putative enhancer core sequence of SV40 SQ ggagtggaaag CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .086 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4799 4809 .08627 0 1: 1 0 GGTGTGGAAAG NM **** 185(62).consensus sequense located in viral gene activators(enhancers SQ tccacacc AI 00000 2 chain 1 sites find / exp.num. .162 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4806 4799 .16245 0 0: 0 0 TCCACACC NM **** 186(64).Direct repeat in mielin proteolipid genes SQ gggaggagrrg CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .304 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5197 5207 .30450 0 1: 1 0 GGGAGGAGAGT 2 6068 6078 .30450 0 1: 1 0 TGGAGGAGAAG NM **** 36(10). NF1-FACtOR SQ tgg-gccaa CC distance between two blocks of site: min = 6 max = 7 AI max mismatch in 1-st block: 0, in 2-nd block: 0 TH 00000 1 chain 1 sites find / exp.num. .325 interval 1 TD num begin end exp.num. dist. mismatch site sequence 1 3463 3477 .32469 7 0: 0 0 TGGtgcgaacGCCAA NM **** 37(15). SP1 SQ gggcggr CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.300 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1799 1805 1.29968 0 0: 0 0 GGGCGGG 2 3921 3927 1.29968 0 0: 0 0 GGGCGGA 3 10317 10323 1.29968 0 0: 0 0 GGGCGGG NM **** 38(18). AP4 FACTOR Nature v332 1988 p557 SQ yCAGCtgygG CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .487 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1922 1931 .48724 0 1: 1 0 ACAGCTGTGG 2 10440 10449 .48724 0 1: 1 0 ACAGCTGTGG NM **** 39(26). NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 13 sites find / exp.num.10.399 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 518 522 10.39941 0 0: 0 0 CCAAT 2 1406 1410 10.39941 0 0: 0 0 CCAAT 3 1654 1658 10.39941 0 0: 0 0 CCAAT 4 3027 3031 10.39941 0 0: 0 0 CCAAT 5 3474 3478 10.39941 0 0: 0 0 CCAAT 6 4935 4939 10.39941 0 0: 0 0 CCAAT 7 5380 5384 10.39941 0 0: 0 0 CCAAT 8 5388 5392 10.39941 0 0: 0 0 CCAAT 9 5699 5703 10.39941 0 0: 0 0 CCAAT 10 6668 6672 10.39941 0 0: 0 0 CCAAT 11 9035 9039 10.39941 0 0: 0 0 CCAAT 12 9924 9928 10.39941 0 0: 0 0 CCAAT 13 10172 10176 10.39941 0 0: 0 0 CCAAT AI 00000 2 chain 9 sites find / exp.num.10.399 interval 16 TD 1 197 193 10.39941 0 0: 0 0 CCAAT 2 3407 3403 10.39941 0 0: 0 0 CCAAT 3 3556 3552 10.39941 0 0: 0 0 CCAAT 4 4948 4944 10.39941 0 0: 0 0 CCAAT 5 6285 6281 10.39941 0 0: 0 0 CCAAT 6 7343 7339 10.39941 0 0: 0 0 CCAAT 7 7438 7434 10.39941 0 0: 0 0 CCAAT 8 7979 7975 10.39941 0 0: 0 0 CCAAT 9 8714 8710 10.39941 0 0: 0 0 CCAAT NM **** 40(2). CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.598 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 924 934 2.59839 0 0: 0 0 TGGCCCATCCC 2 9441 9451 2.59839 0 0: 0 0 TGGCCCATCCC AI 00000 2 chain 3 sites find / exp.num. 2.598 interval 5 TD 1 6074 6064 2.59839 0 0: 0 0 TCCTCCATCTC 2 6331 6321 2.59839 0 0: 0 0 TTCGCCATGCC 3 7708 7698 2.59839 0 0: 0 0 TGGACCATCGC NM **** 187(2.) CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.598 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 924 934 2.59839 0 0: 0 0 TGGCCCATCCC 2 9441 9451 2.59839 0 0: 0 0 TGGCCCATCCC AI 00000 2 chain 3 sites find / exp.num. 2.598 interval 5 TD 1 6074 6064 2.59839 0 0: 0 0 TCCTCCATCTC 2 6331 6321 2.59839 0 0: 0 0 TTCGCCATGCC 3 7708 7698 2.59839 0 0: 0 0 TGGACCATCGC NM **** 188(3). USF II FACTOR OF ADENOVIRUS SQ tgacgca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 8002 8008 .64984 0 0: 0 0 TGACGCA AI 00000 2 chain 1 sites find / exp.num. .650 interval 2 TD 1 4410 4404 .64984 0 0: 0 0 TGACGCA NM **** 192(7). LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num.10.398 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 722 727 10.39844 0 0: 0 0 AGAGGC 2 3423 3428 10.39844 0 0: 0 0 TGGGGC 3 4164 4169 10.39844 0 0: 0 0 AGAGGC 4 4557 4562 10.39844 0 0: 0 0 AGAGGC 5 4918 4923 10.39844 0 0: 0 0 AGGGGC 6 5025 5030 10.39844 0 0: 0 0 AGGGGC 7 5561 5566 10.39844 0 0: 0 0 AGAGGC 8 5905 5910 10.39844 0 0: 0 0 TGAGGC 9 9239 9244 10.39844 0 0: 0 0 AGAGGC AI 00000 2 chain 12 sites find / exp.num.10.398 interval 16 1 949 944 10.39844 0 0: 0 0 AGGGGC 2 1229 1224 10.39844 0 0: 0 0 AGGGGC 3 1368 1363 10.39844 0 0: 0 0 AGAGGC 4 1379 1374 10.39844 0 0: 0 0 TGAGGC 5 5282 5277 10.39844 0 0: 0 0 TGAGGC 6 5880 5875 10.39844 0 0: 0 0 AGGGGC 7 7464 7459 10.39844 0 0: 0 0 AGGGGC 8 7753 7748 10.39844 0 0: 0 0 TGAGGC 9 9466 9461 10.39844 0 0: 0 0 AGGGGC 10 9747 9742 10.39844 0 0: 0 0 AGGGGC 11 9886 9881 10.39844 0 0: 0 0 AGAGGC 12 9897 9892 10.39844 0 0: 0 0 TGAGGC NM **** 193(8). RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 2.598 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 8245 8257 2.59790 7 0: 0 0 TGGaagatctCCA AI 00000 2 chain 1 sites find / exp.num. 2.598 interval 5 TD 1 8257 8245 2.59790 7 0: 0 0 TGGagatcttCCA NM **** 198(17). SITE 3 J vir.v62 n1 p64 SQ cCCCAGGCc AI 00000 2 chain 1 sites find / exp.num. .284 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5916 5908 .28425 0 1: 1 0 TCCCAGGCC NM **** 201(21). Binding site for the human transcription factor Sp1 SQ gggcgg CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 1799 1804 2.59961 0 0: 0 0 GGGCGG 2 3921 3926 2.59961 0 0: 0 0 GGGCGG 3 10317 10322 2.59961 0 0: 0 0 GGGCGG AI 00000 2 chain 3 sites find / exp.num. 2.600 interval 5 TD 1 203 198 2.59961 0 0: 0 0 GGGCGG 2 7462 7457 2.59961 0 0: 0 0 GGGCGG 3 8720 8715 2.59961 0 0: 0 0 GGGCGG NM **** 209(30).Site of initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.299 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2653 2661 1.29944 0 0: 0 0 CAAGAATGG 2 5708 5716 1.29944 0 0: 0 0 GAAGGATGG AI 00000 2 chain 6 sites find / exp.num. 1.299 interval 3 TD 1 923 915 1.29944 0 0: 0 0 GAACAATGG 2 1343 1335 1.29944 0 0: 0 0 GAACAATGG 3 2438 2430 1.29944 0 0: 0 0 GAACGATGG 4 6665 6657 1.29944 0 0: 0 0 GAAGAATGG 5 9440 9432 1.29944 0 0: 0 0 GAACAATGG 6 9861 9853 1.29944 0 0: 0 0 GAACAATGG NM **** 210(32).Optimal sequence for initiation of translation by eukaryotik SQ accatgg AI 00000 2 chain 1 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2696 2690 .64984 0 0: 0 0 ACCATGG NM **** 41(5). HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 2.599 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 4424 4431 2.59912 0 0: 0 0 TTCCAGAA 2 7464 7471 2.59912 0 0: 0 0 TTCCAGAA 3 7548 7555 2.59912 0 0: 0 0 TTCTCGAA 4 7563 7570 2.59912 0 0: 0 0 TTCCTGAA 5 8196 8203 2.59912 0 0: 0 0 TTCTTGAA AI 00000 2 chain 5 sites find / exp.num. 2.599 interval 5 TD 1 4431 4424 2.59912 0 0: 0 0 TTCTGGAA 2 7471 7464 2.59912 0 0: 0 0 TTCTGGAA 3 7555 7548 2.59912 0 0: 0 0 TTCGAGAA 4 7570 7563 2.59912 0 0: 0 0 TTCAGGAA 5 8203 8196 2.59912 0 0: 0 0 TTCAAGAA NM **** 42(7). heat-shock HSP70 SQ ctcgaatgTTcgcgaaa CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .077 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2400 2416 .00822 0 3: 3 0 TTCGCATGTTGGCGAAA NM **** 43(22).Heat-shock induction site A SQ cnngaanttcnng CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .162 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 8189 8201 .16237 0 0: 0 0 CCGGAAGTTCTTG AI 00000 2 chain 1 sites find / exp.num. .162 interval 1 TD 1 8201 8189 .16237 0 0: 0 0 CAAGAACTTCCGG NM **** 44(10). HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.599 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 980 986 2.59937 0 0: 0 0 TGCACTC 2 9497 9503 2.59937 0 0: 0 0 TGCACTC AI 00000 2 chain 1 sites find / exp.num. 2.599 interval 5 TD 1 3009 3003 2.59937 0 0: 0 0 TGCACCC NM **** 45(26).Site of induction of ions of heavy metals SQ ycgcccgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .325 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 8185 8192 .32489 0 0: 0 0 TCGCCCGG NM **** 46(12). SRE ELEMENT OF HSP70 pnas v84 n8 p2203 H21.30 SQ aagggaaaag AI 00000 2 chain 2 sites find / exp.num. .315 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 491 482 .31468 0 1: 1 0 AAGGGAAAAA 2 9008 8999 .31468 0 1: 1 0 AAGGGAAAAA NM **** 48(33).Consensus sequence of the recognition sites for the glucocorti SQ tgttct CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 555 560 2.59961 0 0: 0 0 TGTTCT 2 919 924 2.59961 0 0: 0 0 TGTTCT 3 3361 3366 2.59961 0 0: 0 0 TGTTCT 4 5405 5410 2.59961 0 0: 0 0 TGTTCT 5 7624 7629 2.59961 0 0: 0 0 TGTTCT 6 9072 9077 2.59961 0 0: 0 0 TGTTCT 7 9436 9441 2.59961 0 0: 0 0 TGTTCT AI 00000 2 chain 1 sites find / exp.num. 2.600 interval 5 TD 1 5922 5917 2.59961 0 0: 0 0 TGTTCT NM **** 214(3). ESTROGEN RESPONSIVE ELEMENT SQ gGtCannntGaCC CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .162 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 7028 7040 .16237 0 1: 1 0 GGTCGAACTGACC AI 00000 2 chain 1 sites find / exp.num. .162 interval 1 TD 1 7040 7028 .16237 0 1: 1 0 GGTCAGTTCGACC NM **** 218(16).Consensus binding site of gormone-receptor's complex of gluco SQ zggtxcamnntgtyct AI 00000 2 chain 2 sites find / exp.num. .359 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3827 3812 .35889 0 2: 2 0 CGGCTCGACATGTCCT 2 4149 4134 .35889 0 2: 2 0 CGGAACACGAAGTCCT NM **** 224(24).Site of induction J-strand of Ig genes M SQ tcatttgcac AI 00000 2 chain 2 sites find / exp.num. .315 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 309 300 .31468 0 1: 1 0 TCATCTGCAC 2 8826 8817 .31468 0 1: 1 0 TCATCTGCAC NM **** 233(2). MUSCUL-SPECIFIC FACTOR SQ axxtatncat CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .162 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1044 1053 .16241 0 0: 0 0 ATATATTCAT 2 9561 9570 .16241 0 0: 0 0 ATATATTCAT NM **** 234(3). LIVER-SPECIFIC FACtOR SQ TCntacTC AI 00000 2 chain 1 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 6698 6691 .64978 0 0: 0 0 TCCTACTC NM **** 235(4). CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 11 sites find / exp.num.10.399 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 118 122 10.39941 0 0: 0 0 CCCAC 2 727 731 10.39941 0 0: 0 0 CCCAC 3 889 893 10.39941 0 0: 0 0 CCCAC 4 2108 2112 10.39941 0 0: 0 0 CCCAC 5 2253 2257 10.39941 0 0: 0 0 CCCAC 6 2884 2888 10.39941 0 0: 0 0 CCCAC 7 3651 3655 10.39941 0 0: 0 0 CCCAC 8 5213 5217 10.39941 0 0: 0 0 CCCAC 9 8635 8639 10.39941 0 0: 0 0 CCCAC 10 9244 9248 10.39941 0 0: 0 0 CCCAC 11 9406 9410 10.39941 0 0: 0 0 CCCAC AI 00000 2 chain 7 sites find / exp.num.10.399 interval 16 TD 1 1718 1714 10.39941 0 0: 0 0 CCCAC 2 3278 3274 10.39941 0 0: 0 0 CCCAC 3 5646 5642 10.39941 0 0: 0 0 CCCAC 4 5826 5822 10.39941 0 0: 0 0 CCCAC 5 8227 8223 10.39941 0 0: 0 0 CCCAC 6 8409 8405 10.39941 0 0: 0 0 CCCAC 7 10236 10232 10.39941 0 0: 0 0 CCCAC NM **** 242(11). ANTITROMBIN-III ENHANCER SPECIFIC FACTOR SQ gtGGxxxg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.300 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 4802 4809 1.29956 0 0: 0 0 GTGGAAAG AI 00000 2 chain 3 sites find / exp.num. 1.300 interval 3 TD 1 1235 1228 1.29956 0 0: 0 0 GTGGTAAG 2 3885 3878 1.29956 0 0: 0 0 GTGGAATG 3 9753 9746 1.29956 0 0: 0 0 GTGGTAAG NM **** 243(12). ADIPOCITE SPECIFIC PROTEIN SQ gGCxctgGtcaqg AI 00000 2 chain 1 sites find / exp.num. .241 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6626 6614 .24102 0 2: 2 0 GGCTGTGGTGAGG NM **** 246(15). NF-GMB PROTEIN FOR CYTOKIN 2 SPECIFIC SEQUENCE SQ tyaggrta CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2492 2499 .64978 0 0: 0 0 TTAGGGTA 2 2835 2842 .64978 0 0: 0 0 TTAGGGTA 3 4976 4983 .64978 0 0: 0 0 TCAGGATA NM **** 252(21). RIBOSOMAL PROTEIN SPECIFIC MOTIF (JBC v263 n33 p17772) SQ cttccg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 5147 5152 2.59961 0 0: 0 0 CTTCCG AI 00000 2 chain 5 sites find / exp.num. 2.600 interval 5 TD 1 2336 2331 2.59961 0 0: 0 0 CTTCCG 2 3863 3858 2.59961 0 0: 0 0 CTTCCG 3 7047 7042 2.59961 0 0: 0 0 CTTCCG 4 7650 7645 2.59961 0 0: 0 0 CTTCCG 5 8195 8190 2.59961 0 0: 0 0 CTTCCG NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 5.199 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 4136 4141 5.19922 0 0: 0 0 GACTTC 2 5493 5498 5.19922 0 0: 0 0 GACTTC 3 5692 5697 5.19922 0 0: 0 0 GATTTC 4 7057 7062 5.19922 0 0: 0 0 GATTTC 5 7158 7163 5.19922 0 0: 0 0 GACTTC 6 7482 7487 5.19922 0 0: 0 0 GACTTC AI 00000 2 chain 8 sites find / exp.num. 5.199 interval 9 TD 1 865 860 5.19922 0 0: 0 0 GACTTC 2 1682 1677 5.19922 0 0: 0 0 GATTTC 3 2179 2174 5.19922 0 0: 0 0 GACTTC 4 2269 2264 5.19922 0 0: 0 0 GACTTC 5 6334 6329 5.19922 0 0: 0 0 GACTTC 6 8075 8070 5.19922 0 0: 0 0 GACTTC 7 9382 9377 5.19922 0 0: 0 0 GACTTC 8 10200 10195 5.19922 0 0: 0 0 GATTTC NM **** 254(23). cycle cell 86 45 4 537 544 trt1 SQ GCGAAA CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.600 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 2411 2416 2.59961 0 0: 0 0 GCGAAA 2 4490 4495 2.59961 0 0: 0 0 GCGAAA AI 00000 2 chain 3 sites find / exp.num. 2.600 interval 5 TD 1 210 205 2.59961 0 0: 0 0 GCGAAA 2 6514 6509 2.59961 0 0: 0 0 GCGAAA 3 8727 8722 2.59961 0 0: 0 0 GCGAAA NM **** 258(27).Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct AI 00000 2 chain 1 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 6805 6799 .64984 0 0: 0 0 CATTCCT NM **** 259(28).Regulating element of myofibrilative proteins SQ gcccgannnncaaatat CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .118 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 321 337 .11761 0 2: 2 0 GCCCGCCTCGCAAATGT 2 8838 8854 .11761 0 2: 2 0 GCCCGCCTCGCAAATGT NM **** 262(31).Consensus sequence of transcription regulation sites near SQ cytttgcryycg AI 00000 2 chain 2 sites find / exp.num. .294 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 136 125 .29432 0 1: 1 0 ATTTTGCGTCCG 2 8653 8642 .29432 0 1: 1 0 ATTTTGCGTCCG NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 19 sites find / exp.num.10.399 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 857 861 10.39941 0 0: 0 0 GAAGA 2 962 966 10.39941 0 0: 0 0 GAAGA 3 1837 1841 10.39941 0 0: 0 0 GAAGA 4 2153 2157 10.39941 0 0: 0 0 GAAGA 5 2665 2669 10.39941 0 0: 0 0 GAAGA 6 3346 3350 10.39941 0 0: 0 0 GAAGA 7 5040 5044 10.39941 0 0: 0 0 GAAGA 8 5915 5919 10.39941 0 0: 0 0 GAAGA 9 6075 6079 10.39941 0 0: 0 0 GAAGA 10 6548 6552 10.39941 0 0: 0 0 GAAGA 11 6652 6656 10.39941 0 0: 0 0 GAAGA 12 7023 7027 10.39941 0 0: 0 0 GAAGA 13 7044 7048 10.39941 0 0: 0 0 GAAGA 14 7440 7444 10.39941 0 0: 0 0 GAAGA 15 8201 8205 10.39941 0 0: 0 0 GAAGA 16 8247 8251 10.39941 0 0: 0 0 GAAGA 17 9374 9378 10.39941 0 0: 0 0 GAAGA 18 9479 9483 10.39941 0 0: 0 0 GAAGA 19 10355 10359 10.39941 0 0: 0 0 GAAGA AI 00000 2 chain 6 sites find / exp.num.10.399 interval 16 TD 1 6665 6661 10.39941 0 0: 0 0 GAAGA 2 6752 6748 10.39941 0 0: 0 0 GAAGA 3 7168 7164 10.39941 0 0: 0 0 GAAGA 4 7631 7627 10.39941 0 0: 0 0 GAAGA 5 7908 7904 10.39941 0 0: 0 0 GAAGA 6 8279 8275 10.39941 0 0: 0 0 GAAGA NM **** 264(33)."CCAAT box";one of a number of homology blocks at the 5'-ends SQ grccaatnr AI 00000 2 chain 4 sites find / exp.num. .650 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 199 191 .64972 0 0: 0 0 GGCCAATAG 2 7345 7337 .64972 0 0: 0 0 GGCCAATAA 3 7981 7973 .64972 0 0: 0 0 GGCCAATGA 4 8716 8708 .64972 0 0: 0 0 GGCCAATAG NM **** 265(34).Consensus sequence of a putative transcription control elemen SQ tcccgcm AI 00000 2 chain 1 sites find / exp.num. 1.300 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 4878 4872 1.29968 0 0: 0 0 TCCCGCC NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 21 sites find / exp.num.10.398 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 216 221 10.39844 0 0: 0 0 AAGGGA 2 433 438 10.39844 0 0: 0 0 AAGTGA 3 992 997 10.39844 0 0: 0 0 AAAGGA 4 1761 1766 10.39844 0 0: 0 0 AAATGA 5 2212 2217 10.39844 0 0: 0 0 AAATGA 6 2229 2234 10.39844 0 0: 0 0 AAAGGA 7 2924 2929 10.39844 0 0: 0 0 AAATGA 8 3518 3523 10.39844 0 0: 0 0 AAAGGA 9 3657 3662 10.39844 0 0: 0 0 AAAGGA 10 3730 3735 10.39844 0 0: 0 0 AAATGA 11 4949 4954 10.39844 0 0: 0 0 AAAGGA 12 5010 5015 10.39844 0 0: 0 0 AAAGGA 13 5251 5256 10.39844 0 0: 0 0 AAATGA 14 6981 6986 10.39844 0 0: 0 0 AAGGGA 15 7123 7128 10.39844 0 0: 0 0 AAGGGA 16 7648 7653 10.39844 0 0: 0 0 AAGTGA 17 8008 8013 10.39844 0 0: 0 0 AAAGGA 18 8733 8738 10.39844 0 0: 0 0 AAGGGA 19 8950 8955 10.39844 0 0: 0 0 AAGTGA 20 9509 9514 10.39844 0 0: 0 0 AAAGGA 21 10279 10284 10.39844 0 0: 0 0 AAATGA AI 00000 2 chain 12 sites find / exp.num.10.398 interval 16 TD 1 272 267 10.39844 0 0: 0 0 AAATGA 2 491 486 10.39844 0 0: 0 0 AAGGGA 3 1085 1080 10.39844 0 0: 0 0 AAGTGA 4 1987 1982 10.39844 0 0: 0 0 AAATGA 5 2241 2236 10.39844 0 0: 0 0 AAGGGA 6 2545 2540 10.39844 0 0: 0 0 AAATGA 7 6024 6019 10.39844 0 0: 0 0 AAATGA 8 6963 6958 10.39844 0 0: 0 0 AAGGGA 9 8789 8784 10.39844 0 0: 0 0 AAATGA 10 9008 9003 10.39844 0 0: 0 0 AAGGGA 11 9602 9597 10.39844 0 0: 0 0 AAGTGA 12 10505 10500 10.39844 0 0: 0 0 AAATGA NM **** 269(38).Consensus of a sequence found downstream from the cap site of SQ gcttctgr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .325 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3408 3415 .32489 0 0: 0 0 GCTTCTGA AI 00000 2 chain 2 sites find / exp.num. .325 interval 1 TD 1 4433 4426 .32489 0 0: 0 0 GCTTCTGG 2 7473 7466 .32489 0 0: 0 0 GCTTCTGG NM **** 270(40).Sequence frequently found in the promoter region of histone H SQ ccgcatcttctcctcctgctc AI 00000 2 chain 1 sites find / exp.num. .013 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 6084 6064 .01322 0 5: 5 0 CCTGCTCTTCTCCTCCATCTC NM **** 271(41).Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 16 sites find / exp.num.10.399 interval 16 TH num begin end exp.num. dist. mismatch site sequence TD 1 714 718 10.39941 0 0: 0 0 CGCAC 2 1546 1550 10.39941 0 0: 0 0 CGCAC 3 1663 1667 10.39941 0 0: 0 0 CGCAC 4 2300 2304 10.39941 0 0: 0 0 CGCAC 5 2977 2981 10.39941 0 0: 0 0 CGCAC 6 3915 3919 10.39941 0 0: 0 0 CGCAC 7 5516 5520 10.39941 0 0: 0 0 CGCAC 8 6262 6266 10.39941 0 0: 0 0 CGCAC 9 7449 7453 10.39941 0 0: 0 0 CGCAC 10 7731 7735 10.39941 0 0: 0 0 CGCAC 11 7779 7783 10.39941 0 0: 0 0 CGCAC 12 8147 8151 10.39941 0 0: 0 0 CGCAC 13 8462 8466 10.39941 0 0: 0 0 CGCAC 14 9231 9235 10.39941 0 0: 0 0 CGCAC 15 10064 10068 10.39941 0 0: 0 0 CGCAC 16 10181 10185 10.39941 0 0: 0 0 CGCAC AI 00000 2 chain 15 sites find / exp.num.10.399 interval 16 TD 1 54 50 10.39941 0 0: 0 0 CGCAC 2 1094 1090 10.39941 0 0: 0 0 CGCAC 3 1332 1328 10.39941 0 0: 0 0 CGCAC 4 2050 2046 10.39941 0 0: 0 0 CGCAC 5 3019 3015 10.39941 0 0: 0 0 CGCAC 6 3469 3465 10.39941 0 0: 0 0 CGCAC 7 4062 4058 10.39941 0 0: 0 0 CGCAC 8 4257 4253 10.39941 0 0: 0 0 CGCAC 9 4701 4697 10.39941 0 0: 0 0 CGCAC 10 5144 5140 10.39941 0 0: 0 0 CGCAC 11 7450 7446 10.39941 0 0: 0 0 CGCAC 12 8571 8567 10.39941 0 0: 0 0 CGCAC 13 9611 9607 10.39941 0 0: 0 0 CGCAC 14 9850 9846 10.39941 0 0: 0 0 CGCAC 15 10568 10564 10.39941 0 0: 0 0 CGCAC