Blast search TRRD database
You may perform the search for regions homologous to the transcription
factor binding sites described in TRRD in the sequence of interest. The
program BinomSite performs the search by binomial probability estimation
of the similarity between fragments of userís sequence and each of the
transcription factor binding sites described in TRRD.
A program package for detection and analysis of conservative
conformational and physicochemical properties in sets of transcription
factor binding sites. It contains the knowledge base of conservative
properties of transcription factor binding sites. This resource contains
also a tool for recognition of potential binding sites based on the data
about conservative properties of the site in a user-specified genomic
For transcription factor binding site recognition using genetic
A web system for the detection of degenerate motifs and large-scale
recognition of eukaryotic promoters
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