Active module for constructing recognition groups
Active module for recognizing transcription factor binding sites using recognition groups
Active module predicting the level of mRNA translation
Analysis of pairwise positional correlations
Analysis of protein integral physico-chemichal properties
Consensus and weight matrices: ConsFreg
Consensus: knowledge base on consensuses of transcription factor binding sites
Database of expression patterns: TRRDEXP4
Database of references: TRRDBIB4
Database of transcription factor binding sites: TRRDSITES4
Database of transcription factors: TRRDFAC4
Database on activities of DNA/RNA functional sites
Database on aligned sets of transcription factor binding sites
Database on physico-chemical and conformational properties of DNA
Database on sets of transcription factor binding sites
Database on sets of transcription factor binding sites
Database on translational activity of mRNA sequences
DNA bending stiffness feature Draw
Generator of C codes of consensuses and frequency matrices from aligned sequences of DNA/RNA sites
Graphic representation of DNA properties
Knowledge base on functional site activities
Knowledge base on significant characteristics of mRNA translation level
Knowledge base on weight matrix of transcription factor binding sites
mRNA Translation (Leader mRNA)
Nucleosomal Organization of DNA
Other Programs as a Part of GeneExpress System
Precise recognition by consensus of CEBP and NF1 sites
Precise recognition by frequency matrix
PROFILES, database on significant physico-chemical properties of transcription factor binding sites
Program package for prediction of the quantitative activity levels of DNA/RNA functional sites
Property Plot, graphic representation of DNA properties
PROPERTY, database on DNA/RNA functional sites activities
RNA secondary structure prediction by genetic algorithm
Samples of nucleosome binding sites
SAMPLES, database on sets of transcription factor binding sites and other regulatory regions
Searching for oligonucleotide repeats in DNA sequences
Site Activity Prediction (ACTIVITY)
The Gene Network database: description of cells and cell lines
The Gene Network database: description of genes
The Gene Network database: description of processes
The Gene Network database: description of proteins and their complexes
The Gene Network database: description of relations between the gene network components
The Gene Network database: description of substances
The Gene Network database: references
The Gene Network database: scheme of the gene network
Transcription factor binding site recognition (TFBSR)
Transcription Regulation (TRRD)
© 1997-99, IC&G SB RAS, Laboratory of Theoretical Genetics