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C-CODE This field contains the program calculating the profile of the sequence-dependent feature or activity predicted values along abitrary sequence in the C language of the ANSI standard.

Each C program documented within the KNOWLEDGE entry has a check-box in the MENU window of the Activity Tools (see field WW).

 

Example

C-CODE

/*=========================================================================*/

/* (0) LUC-activity YY1 repressed increases with Twist (DNA/Prot) decrease */

/*=========================================================================*/

double TwDnaProt_for_LUC_YY1repressed (char *s){

double X; char *seq; int i,k, SiteLength=12;

double DinucPar[16]={

/*.AA.....AT.....AG.....AC.....TA.....TT.....TG.....TC.*/

35.60, 29.30, 31.90, 31.10, 39.50, 35.60, 36.00, 35.90,

/*.GA.....GT.....GG.....GC.....CA.....CT.....CG.....CC.*/

35.90, 31.10, 33.30, 34.60, 35.90, 31.90, 34.90, 33.30};

seq=&s[0]; if(strlen(seq) < SiteLength)return(-1001.);

for (i=0, X=0.;i < SiteLength-1;i++) {

switch (seq[i ]) {

case 'A': k= 0; break;case 'T': k= 4; break;

case 'G': k= 8; break;case 'C': k=12; break;default : return(-1002.); }

switch (seq[i+1]) {

case 'A': k+=0; break;case 'T': k+=1; break;

case 'G': k+=2; break;case 'C': k+=3; break;default : return(-1003.); }

if (k > 15) return(-1004.); X+=DinucPar[k]; }

return (X/(double)(SiteLength-1));}

 

This field could be numerously repeated in accordance with the blocks referring to each feature:

CF

 Mathematical Model

CT

Computational Method

DW

Link to WEIGHT database

DP

Link to PROPERTY database

PV

Property Name

HL

Indicates Feature Deviation

AB

Analyzed Region

UT

Utility

LC

Linear Correlation Coefficient

AL

Significance Level

FG

Graphical Representation of Test Results

C-CODE