EVOLGA
: Predicting 2D structure of the sample of aligned RNA sequences
Input RNA sequence alignment in ClustalW output format:
CLUSTAL X (1.8) multiple sequence alignment SIVMM251 GGUUCUUGGGUUUUCUCGCAACGGCAGGUUCUGCAAUGGGCGCGGCCUCGUUCAGGCUGA SIVMM142 GGUUCUUGGGUUUUCUCGCAACGGCAGGUUCUGCAAUGGGCGCGGCGUCGUUGACCGUGA HIV2ROD GGUUCUUGGGUUUUCUCGCAACAGCAGGUUCUGCAAUGGGCGCGGCGUCCCUGACCGUGU HIV2BEN GGUUCUUGGGUUUUCUCGCGACAGCAGGUUCUGCAAUGGGCGCGCGGUCCCUGACGCUGU HIV2CAM2 GGUUCUUGGGUUUUCUCACAACAGCAGGAGUUGCAAUGGGCACGGCGUCCUUGACGCUGU HIV2NIHZ GGUUCCUAGGUUUUCUCGCAACAGCAGGUUCUGCCAUGGGCGCGGCGUCCUUGACGCUGU HIV2ISY GGUUCCUAGGUUUUCUCACGACAGCAGGUGCUGCAAUGGGGGCGGCGUCUCUGACGCUGU HIV2ST GGUUCUUAGGUUUUCUCACGACAGCAGGAGCUGCAAUGGGCGCGGCGUCCUUGACGCUGU HIV2D194 GGUUCUUGGGUUUUCUCGCGACAGCAGGUUCUGCAAUGGGCGGCGCGUCCUUGACGCUGU HIV2UC1 GGUUCUUGGGACUUCUUGCAAUGGCAGGUUCUGCAAUGGGCGCAACGUCCUUGACGCUGU ***** * ** **** * * ***** *** ***** ** * * **
Stop calculation when population degeneracy D exceeds
( 0 < D < 1 )
Minimal helix length:
2
3
4
5
6
nucleotides
Selection temperature:
kkal/mol
Randomization parameter:
1
2
3
4
5
6
7
8
9
0
Sharing percent:
kkal/mol
Adaptive mutation ampificating percent:
kkal/mol
About
Example
This resource was developed at the Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia
