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Publications

2002

Ananko E.A., Podkolodny N.L., Stepanenko I.L., Ignatieva E.V., Podkolodnaya O.A., Kolchanov N.A. GeneNet: a database on structure and functional organisation of gene networks. // Nucleic Acids Res., 2002. V. 30. No. 1. P. 398-401.
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Kolchanov N.A., Nedosekina E.A., Ananko E.A., Likhoshvai V.A., Podkolodny N.L., Ratushny A.V., Stepanenko I.L., Podkolodnaya O.A., Ignatieva E.V., Matushkin Y.G. GeneNet database: description and modeling of gene networks. // In Silico Biol. 2002. V. 2. No. 2. P. 97-110.

2000

Kolchanov N.A., Anan'ko E.A., Kolpakov F.A., Podkolodnaya O.A., Ignat'eva E.V., Goryachkovskaya T.N., Stepanenko I.L. Gene Networks // Molecular Biology (Msk.), 2000. V. 34. No. 4. P. 449-460.
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Ananko E.A., Kolpakov F.A., Kolchanov N.A. GeneNet database: a technology for a formalized description of gene networks. // Proc. of the Second International Conference on Bioinformatics of Genome Regulation and Structure. BGRS'2000. Novosibirsk, Russia, August 7-11, 2000. P. 174-177.
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Ratushny A.V., Podkolodnaya O.A., Ananko E.A., Likhoshvai V.A. Mathematical model of erythroid cell differentiation regulation. // Proc. of the Second International Conference on Bioinformatics of Genome Regulation and Structure. BGRS'2000. Novosibirsk, Russia, August 7-11, 2000. P. 203-206.
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Ratushny A.V., Ignatieva E.V., Matushkin Yu.G., Likhoshvai V.A. Mathematical model of cholesterol biosynthesis regulation in the cell // Proc. of the Second International Conference on Bioinformatics of Genome Regulation and Structure. BGRS'2000. Novosibirsk, Russia, August 7-11, 2000. P. 199-202.
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1999

Kolpakov F.A. and Ananko E.A. Interactive data input into the GeneNet database // Bioinformatics. 1999. V. 15. No. 7/8. P. 713-714.
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Anan'ko E.A., Kolpakov F.A., Kolesov G.B., Kolchanov N.A. Automatic generation of gene network schemes based on their formalized description in the GeneNet database. // Biophysics (Msk.). 1999. V.44. No. 4. P. 610-613.
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Kolpakov F.A., Ananko E.A. The GeneNet database: formalized description and visualization of gene networks dynamics based on experimental data // Proc. of the international conference on Theory and Mathematics in Biology and Medicine. 1999. Amsterdam. The Netherlands, June 29 – July 3. P. 286
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Ananko E.A., Kolpakov F.A., Podkolodnaya O.A., Ignatieva E.V., Goryachkovsky T.N.,Stepanenko I.L., Busygina T.V., Kolesov G.B., Grigorovich D.A., Kolchanov N.A. Gene networks: formalized description and visualization in the GeneNet database // Proc. of the international conference on Theory and Mathematics in Biology and Medicine. 1999. Amsterdam. The Netherlands, June 29 – July 3. P. 58-59
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1998

Kolpakov F.A., Ananko E.A., Kolesov G.B. and Kolchanov N.A. GeneNet: a database for gene networks and its automated visualization // Bioinformatics, 1998. V.14. No. 6. P. 529-537.
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Ananko E.A., Kolpakov F.A., Kolesov G.B., Kolchanov N.A. Gene networks: a database and its automated visualization through the Internet in the GeneNet computing system // Proc. I Intern. Conference on Bioinformatics of Genome Regulation and Structure. Novosibirsk. Russia. 1998. P. 82-85.
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Kolpakov F.A., Ananko E.A., Kolesov G.B., Kolchanov N.A. GeneNet: a database for gene networks and its automated visualization through the Internet // Dagstuhl seminar “Bioinformatics” Modelling and simulation of gene regulation and metabolic pathways. 1998
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Ananko E.A., Kolpakov F.A., Kolesov G.B., Kolchanov N.A. Automatic generation of gene networks schemes from formalized description in the GeneNet database // Abstracts of Theoretical Biophysics International School. 1998. Moscow. P. 26
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