CRASP publications

Afonnikov D.A. (2000)CRASP: software package for analysis of physicochemical parameters of aligned sequences of protein families. The Second International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2000), Novosibirsk, Russia, August 7 - 11, 2000, Vol. 2, pp. 145-148.

Afonnikov D.A.  (2000)  Novel functional features of DNA-binding domain of the "homeodomain" class revealed by analysis of correlations of isoelectric point of amino acids in its positions. The Second International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2000), Novosibirsk, Russia, August 7 - 11, 2000, Vol. 2, pp. 149-151.

Afonnikov D.A.  (2000) Stability of the partial correlation coefficient estimatyes for residue characteristics at different positions of amino acid sequences. The Second International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2000), Novosibirsk, Russia, August 7 - 11, 2000, Vol. 2, pp. 207-210.

Afonnikov, D.A., Oshchepkov D.Yu., Kolchanov N.A. (2000) A method of estimation of variances and covariances of protein physico-chemical characteristics in families of homologous sequences. Comput. Technologies, 5, 79 .

Afonnikov,D.A and Titov,I.I. (1998) Functional relationship between amino acid residues at n- and c-termini of DNA-binding regions of transcription factors CREB and AP-1 revealed by analyzing the pair correlations of amino acid substitutions. Proc. 1st Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, 377-379 .

Afonnikov,D.A. and Wingender,E. (1998) Statistical relation between the positions of the alpha-helix in the zinc-finger DNA-binding domain: results from the phage display data analysis. Proc. 1st Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, 380-383 .

Afonnikov,D.A.,  Titov,I.I.,   Kondrakhin,Yu.V.   (1998) Correlations between positions at the N and C- ends of the DNA-binding region of the CREB and AP-1 transcription factor families reflect their functional interaction. Int. Symp. Protein Structure, Stability, and Folding. Fundamental and Medical Aspects, Book of Program and abstracts, ONTI PNC RAN, Puschino, 1998., p 114.

Afonnikov D.A., Kondrakhin Yu.V., Titov I.I. "Revealing of Correlated Positions of the DNA-binding region of the CREB and Ap-1 transcription factor families". Mol. Biol. (Russian), 1997, 31 (4), 741-748.