How to search TRRD?
Search with SRS
Browse TRRD
Blast search
The SRS system enables to
make complex queries and navigation through TRRD and related databases. According to the
main types of information contained in TRRD, it is possible to generate queries to all the
tables by means of SRS Query Manager.
Example :
The query is 'To find human gene "apolipoprotein AI"'. To make
such a query, you should perform the following:
1) On the page 'SRS access to
TRRD 5' click the hyperlink ‘TRRDGENES’.
2) This will bring up the home page of the TRRDGENES table.
Click the button 'Search' .
3) This will bring up the Standard query form for the
TRRDGENES table.
From the drop-down menu ‘combine searches with’, select ‘AND’ (marked by arrow 1
in the Figure).
Select the field "Genename_Full" from the drop-down menu (arrow 2). In the
text-box to the right, type ‘apolipoprotein’ (arrow 3).
Next select the field ‘Species’ from the drop-down menu (arrow 2) and type ‘human’
in the text-box to the right.
For displaying the query result, select the fields by scrolling the drop-down menu
‘Create your own view’ (arrow 4).
Click the button 'Submit Query' (arrow 5).
4) This will bring up the resulting query page with the
list of entries from the table TRRDGENES.
To display more information, click the hyperlink "TRRDGENES4:A00264" from the
line
5) This will bring up the entry with the general
description of the human apolipoprotein A1 gene in the TRRDGENES table data format. The
hyperlinks
Transcription
factors,Gene
expression regulation,Bibliography
provide access to the other TRRD tables. By clicking the hyperlink (TRRD
Viewer), you may display the map of gene regulatory
regions reconstructed by TRRD Viewer.
You may browse
TRRD by gene names and by species
Choose the option "Browse
the TRRD database" from the top menu "Access to TRRD" on the TRRD
home page 
Example:
The task is 'To find all chicken genes'. To make such a query, do the
following:
1) On the page "Browse genes by species" choose the line
2) Click the name of an organism
3) This will bring up the list of entries from the TRRD database, which contain chicken
genes.
To perform blast search TRRD database,
click the hyperlink ‘Blast search TRRD database’ from the top menu ‘Access to
TRRD’ on the TRRD home page.
Fill in BLAST submission page and click the button
‘Submit’.
For more details, please, address ‘Blast search Help’.
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